; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G002650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G002650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGag-pro-like protein
Genome locationchr08:6131837..6132415
RNA-Seq ExpressionLsi08G002650
SyntenyLsi08G002650
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037719.1 uncharacterized protein E6C27_scaffold141G00110 [Cucumis melo var. makuwa]5.6e-5058.12Show/hide
Query:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR
        MDA+IL++ Q    EIEV+MI++ SSN+K S E +S  +PLVIHYEEK S+   I+ PK M +EIPGPFAYKDN VVP KYE QFI +NV      G+TR
Subjt:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR

Query:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFV
          RCYT DNL+++ KEDE R+RKGKA+E+   DDL+DL++VF E+ TL +++T  + V++EEA + LKLIKQSEYKVIEQL RTPA I  +
Subjt:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFV

KAA0046608.1 uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]3.4e-5560.2Show/hide
Query:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR
        M+++IL+I Q    EIEV+MI+N SSNEK S E +   +PLVIHYEEKSS+   I+ PK M VEIPGPFAYKDN  VPWKYECQFIT+NV      G+TR
Subjt:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR

Query:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF
        SGRCYT DNL+++SKEDE R+RKGKA+E+   DDL+DL++VF EK TL  ++T ++ V++EEA + LKLIKQSEYKVIEQL+RT A I  + +  +
Subjt:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF

KAA0052108.1 uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa]9.5e-4261.74Show/hide
Query:  EIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNV----SEGMTRSGRCYTPDNLRNIS
        E EV+MI+N SSNEK S E +S  +PLVIHYEE  S+   IK PK M VEI GPFAYKDN VVPWKYEC FIT+NV     +G+TRSGRCYTPDNL+ +S
Subjt:  EIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNV----SEGMTRSGRCYTPDNLRNIS

Query:  KEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEA
        KEDE RQ KGKA+E+   DDL+DL++VF EK TL  ++T ++ V++E+A
Subjt:  KEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEA

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]1.8e-5660.2Show/hide
Query:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR
        MD++IL+I Q    EIEV+MI+N SSNEK S E +   +P VIHYEEK S+   I+ PK M VEIPGPFAYKDN  VPWKYECQFIT+NV      G+TR
Subjt:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR

Query:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF
        SGRCYTPDNL+++SKEDE R+RKGKA+E+   DDL+DL++VF +K TL  ++T ++ V++EEA + LKLIKQSEYKVIEQL+RTPA I  + +  +
Subjt:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF

KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]4.3e-5861.73Show/hide
Query:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNV----SEGMTR
        MD++IL+I Q    EIEV+MI+N SSNEK S E +   +PLVIHYEEK S+   I+ PK M VEIPGPFAYKDN  VPWKYECQFIT+NV     EG+TR
Subjt:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNV----SEGMTR

Query:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF
        SGRCYTPDNL+++SKEDE R+RKGKA+E+   DDL+DL++VF EK TL  ++T ++ V++EEA + LKLIKQSEYKVIEQL+RTPA I  + +  +
Subjt:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF

TrEMBL top hitse value%identityAlignment
A0A5A7T8U4 Uncharacterized protein2.7e-5058.12Show/hide
Query:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR
        MDA+IL++ Q    EIEV+MI++ SSN+K S E +S  +PLVIHYEEK S+   I+ PK M +EIPGPFAYKDN VVP KYE QFI +NV      G+TR
Subjt:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR

Query:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFV
          RCYT DNL+++ KEDE R+RKGKA+E+   DDL+DL++VF E+ TL +++T  + V++EEA + LKLIKQSEYKVIEQL RTPA I  +
Subjt:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFV

A0A5A7TUT4 Uncharacterized protein1.6e-5560.2Show/hide
Query:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR
        M+++IL+I Q    EIEV+MI+N SSNEK S E +   +PLVIHYEEKSS+   I+ PK M VEIPGPFAYKDN  VPWKYECQFIT+NV      G+TR
Subjt:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR

Query:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF
        SGRCYT DNL+++SKEDE R+RKGKA+E+   DDL+DL++VF EK TL  ++T ++ V++EEA + LKLIKQSEYKVIEQL+RT A I  + +  +
Subjt:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF

A0A5A7UA36 Reverse transcriptase domain-containing protein4.6e-4261.74Show/hide
Query:  EIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNV----SEGMTRSGRCYTPDNLRNIS
        E EV+MI+N SSNEK S E +S  +PLVIHYEE  S+   IK PK M VEI GPFAYKDN VVPWKYEC FIT+NV     +G+TRSGRCYTPDNL+ +S
Subjt:  EIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNV----SEGMTRSGRCYTPDNLRNIS

Query:  KEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEA
        KEDE RQ KGKA+E+   DDL+DL++VF EK TL  ++T ++ V++E+A
Subjt:  KEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEA

A0A5A7V681 Retrotrans_gag domain-containing protein8.7e-5760.2Show/hide
Query:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR
        MD++IL+I Q    EIEV+MI+N SSNEK S E +   +P VIHYEEK S+   I+ PK M VEIPGPFAYKDN  VPWKYECQFIT+NV      G+TR
Subjt:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSE----GMTR

Query:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF
        SGRCYTPDNL+++SKEDE R+RKGKA+E+   DDL+DL++VF +K TL  ++T ++ V++EEA + LKLIKQSEYKVIEQL+RTPA I  + +  +
Subjt:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF

A0A5A7VAU5 Uncharacterized protein2.1e-5861.73Show/hide
Query:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNV----SEGMTR
        MD++IL+I Q    EIEV+MI+N SSNEK S E +   +PLVIHYEEK S+   I+ PK M VEIPGPFAYKDN  VPWKYECQFIT+NV     EG+TR
Subjt:  MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNV----SEGMTR

Query:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF
        SGRCYTPDNL+++SKEDE R+RKGKA+E+   DDL+DL++VF EK TL  ++T ++ V++EEA + LKLIKQSEYKVIEQL+RTPA I  + +  +
Subjt:  SGRCYTPDNLRNISKEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCAGAGATTTTAATGATAAGTCAGACAGACCCATGGGAAATTGAGGTTGATATGATTTCCAATACTTCATCTAACGAAAAAATCTCAAAAGAGGGATCGTCTAG
ACGAGAACCATTAGTTATTCATTATGAAGAAAAATCCAGTGTCACCTATTGTATCAAGATACCAAAGACAATGATCGTCGAGATACCAGGTCCTTTTGCTTATAAGGATA
ATCGAGTTGTACCGTGGAAATACGAATGTCAGTTCATCACAAACAATGTTTCTGAAGGGATGACTCGTAGTGGAAGATGTTACACACCGGATAACTTAAGGAATATTTCG
AAAGAGGATGAAGCTCGACAACGCAAGGGTAAAGCTGTGGAAATAACAAGTGGGGATGATCTAGACGATTTGAACGAAGTCTTTGCTGAAAAGGCCACTCTAGCAAGAAG
GAAGACAAGCAACAAGTTCGTTGCAGAGGAAGAGGCTCGCAAGCTTTTGAAGTTGATCAAACAGAGCGAATATAAAGTAATTGAGCAATTATATCGTACCCCAGCCCCTA
TCGATTTTGTCATTATTCTTGCATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCAGAGATTTTAATGATAAGTCAGACAGACCCATGGGAAATTGAGGTTGATATGATTTCCAATACTTCATCTAACGAAAAAATCTCAAAAGAGGGATCGTCTAG
ACGAGAACCATTAGTTATTCATTATGAAGAAAAATCCAGTGTCACCTATTGTATCAAGATACCAAAGACAATGATCGTCGAGATACCAGGTCCTTTTGCTTATAAGGATA
ATCGAGTTGTACCGTGGAAATACGAATGTCAGTTCATCACAAACAATGTTTCTGAAGGGATGACTCGTAGTGGAAGATGTTACACACCGGATAACTTAAGGAATATTTCG
AAAGAGGATGAAGCTCGACAACGCAAGGGTAAAGCTGTGGAAATAACAAGTGGGGATGATCTAGACGATTTGAACGAAGTCTTTGCTGAAAAGGCCACTCTAGCAAGAAG
GAAGACAAGCAACAAGTTCGTTGCAGAGGAAGAGGCTCGCAAGCTTTTGAAGTTGATCAAACAGAGCGAATATAAAGTAATTGAGCAATTATATCGTACCCCAGCCCCTA
TCGATTTTGTCATTATTCTTGCATTCTGA
Protein sequenceShow/hide protein sequence
MDAEILMISQTDPWEIEVDMISNTSSNEKISKEGSSRREPLVIHYEEKSSVTYCIKIPKTMIVEIPGPFAYKDNRVVPWKYECQFITNNVSEGMTRSGRCYTPDNLRNIS
KEDEARQRKGKAVEITSGDDLDDLNEVFAEKATLARRKTSNKFVAEEEARKLLKLIKQSEYKVIEQLYRTPAPIDFVIILAF