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Lsi08G002880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G002880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCytochrome c biogenesis CcmF C-terminal-like mitochondrial protein
Genome locationchr08:7375214..7375660
RNA-Seq ExpressionLsi08G002880
SyntenyLsi08G002880
Gene Ontology termsGO:0017004 - cytochrome complex assembly (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAR86717.1 zinc finger protein [Populus euphratica]7.3e-1372.41Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP
        RYEKRGRDDIIYVRTAPRGVDPAS QVFDQGTG+FPLPL    GR      L K+  P
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP

KAF3452199.1 hypothetical protein FNV43_RR08297 [Rhamnella rubrinervis]6.6e-1491.11Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR
        RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR

OIT40703.1 hypothetical protein A4A49_63613 [Nicotiana attenuata]6.6e-1491.11Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR
        RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR

PPS15705.1 hypothetical protein GOBAR_AA04875 [Gossypium barbadense]9.5e-1372.41Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP
        RYEKRGRDDIIYVRTAPRGVDPAS+QVFDQG GEFPLPL    GR      L K+  P
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP

RDY14275.1 Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein, partial [Mucuna pruriens]8.6e-1475.86Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP
        RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR      L K+  P
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP

TrEMBL top hitse value%identityAlignment
A0A1R3KTZ4 Uncharacterized protein4.6e-1372.41Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP
        RYEKRGRDDIIYVRTAPRGVDPAS+QVFDQGTGEFPLP     GR      L K+  P
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP

A0A1R3KU35 Uncharacterized protein4.6e-1372.41Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP
        RYEKRGRDDIIYVRTAPRGVDPAS+QVFDQGTGEFPLP     GR      L K+  P
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP

A0A314LGK4 Uncharacterized protein3.2e-1491.11Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR
        RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGR

A0A371IH26 Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein (Fragment)4.2e-1475.86Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP
        RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPL    GR      L K+  P
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP

Q6RUR5 Zinc finger protein3.5e-1372.41Show/hide
Query:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP
        RYEKRGRDDIIYVRTAPRGVDPAS QVFDQGTG+FPLPL    GR      L K+  P
Subjt:  RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGGTACGAAAAGAGAGGTCGTGATGATATCATCTACGTCCGTACCGCTCCTCGTGGAGTAGATCCCGCATCCAACCAAGTCTTTGACCAGGGAACAGGAGAATTCCCACT
ACCGCTCTTGCTGACGGTTGGGAGAGCTGCCCTAGATGAATTGTTGCGGAAAGAGCGGATACCACTATGTGGTCTACGAGCTGCTGCAGCCCGGACGGTGGAAGAGTCAG
GGGAGGCCGGGTCATTTGACGGAAATGGAAGCCTTTTTTCCTATTAA
mRNA sequenceShow/hide mRNA sequence
CGGTACGAAAAGAGAGGTCGTGATGATATCATCTACGTCCGTACCGCTCCTCGTGGAGTAGATCCCGCATCCAACCAAGTCTTTGACCAGGGAACAGGAGAATTCCCACT
ACCGCTCTTGCTGACGGTTGGGAGAGCTGCCCTAGATGAATTGTTGCGGAAAGAGCGGATACCACTATGTGGTCTACGAGCTGCTGCAGCCCGGACGGTGGAAGAGTCAG
GGGAGGCCGGGTCATTTGACGGAAATGGAAGCCTTTTTTCCTATTAA
Protein sequenceShow/hide protein sequence
RYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLPLLLTVGRAALDELLRKERIPLCGLRAAAARTVEESGEAGSFDGNGSLFSY