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Lsi08G002980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G002980
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal protein S14
Genome locationchr08:7915239..7915714
RNA-Seq ExpressionLsi08G002980
SyntenyLsi08G002980
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022904 - respiratory electron transport chain (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0070469 - respirasome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR002132 - Ribosomal protein L5
IPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM97419.1 hypothetical protein AMTR_s00251p00014110 [Amborella trichopoda]2.2e-3662.16Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPW------------------------------SGFLQKDEGETHDMRDKHREKLSKLPR
        METE CELSPEL+DHFEIFEHI GFNVTIVTSANT DETLPPW                                F  KD     DM DK R KLSKLPR
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPW------------------------------SGFLQKDEGETHDMRDKHREKLSKLPR

Query:  KSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW
         SSFARVRN CIST RP  V EFFRIS I F GLASRG LIGIKKSSW
Subjt:  KSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW

ESQ39480.1 hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]1.9e-5391.53Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIV
        METEFCE SPELEDHFEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMRDKHR KLSKLP  SSFARVRN  ISTGRPR V EFFRISRIV
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIV

Query:  FRGLASRGSLIGIKKSSW
        FRGLASRGSL+GIKKSSW
Subjt:  FRGLASRGSLIGIKKSSW

KAF8364956.1 hypothetical protein HHK36_033039 [Tetracentron sinense]9.0e-5181.2Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETH---------------DMRDKHREKLSKLPRKSSFARVRNLCISTG
        METEFCE SPELEDHFEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDEGET                DMRDKHR KLSKLPR SSFARVRN CISTG
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETH---------------DMRDKHREKLSKLPRKSSFARVRNLCISTG

Query:  RPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW
        RPR V EFFRISRIVFRGLASRG L+GIKKSSW
Subjt:  RPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW

KAG6570300.1 60S ribosomal protein L5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2577.11Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETH------------DMRDKHREKLSKLPRK
        METEFC  SPELEDHFEIFEHI+GFNVTI+TSANTQDETLPPWSGFLQKDEGET             DMRDK REKLSKL RK
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETH------------DMRDKHREKLSKLPRK

XP_020530652.1 uncharacterized protein LOC110008314 [Amborella trichopoda]1.2e-3159.15Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGE------------------------THDMRDKHREKLSKLPRKSSFAR
        ME EFC+LSPELEDHF+IFEHI GFNVTI+TSANTQ ETLPPWSGFLQKDEG+                          D+ DKHR KLSKLPR SSFAR
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGE------------------------THDMRDKHREKLSKLPRKSSFAR

Query:  VRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW
                        FF IS IVFRGLASRG L+G KKSSW
Subjt:  VRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW

TrEMBL top hitse value%identityAlignment
A0A1J7FMN2 Cytochrome b6.6e-2378.67Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDM---RDKHREKLSKLPRKS
        METEFCE SPELEDHFEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDEGETH M   R   R +  K P  S
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDM---RDKHREKLSKLPRKS

A0A385G2C1 Ribosomal protein L52.3e-2387.69Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMR--DKHRE
        METEFCE SPELEDHFEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDEGETH  R  D H+E
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMR--DKHRE

V4KNP1 Uncharacterized protein9.4e-5491.53Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIV
        METEFCE SPELEDHFEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMRDKHR KLSKLP  SSFARVRN  ISTGRPR V EFFRISRIV
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIV

Query:  FRGLASRGSLIGIKKSSW
        FRGLASRGSL+GIKKSSW
Subjt:  FRGLASRGSLIGIKKSSW

V7AG61 Uncharacterized protein1.1e-2261.9Show/hide
Query:  EHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETH------DMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGI
        +HI  FNVTIVT  NTQD+TLPPW+ FLQ DEGET       DMRDK   KLSKLPR SSFAR        G P  V +FF+IS I+ RGLASRG L+G 
Subjt:  EHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETH------DMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGI

Query:  KKSSW
        KKSSW
Subjt:  KKSSW

W1NRR0 Uncharacterized protein1.0e-3662.16Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPW------------------------------SGFLQKDEGETHDMRDKHREKLSKLPR
        METE CELSPEL+DHFEIFEHI GFNVTIVTSANT DETLPPW                                F  KD     DM DK R KLSKLPR
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPW------------------------------SGFLQKDEGETHDMRDKHREKLSKLPR

Query:  KSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW
         SSFARVRN CIST RP  V EFFRIS I F GLASRG LIGIKKSSW
Subjt:  KSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW

SwissProt top hitse value%identityAlignment
P14875 Ribosomal protein S14, mitochondrial5.7e-2488.89Show/hide
Query:  DMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW
        DMRDKHR KLSKLPR SSFARVRN CISTGRPR V EFFRISRIVFRGLASRG L+GIKKSSW
Subjt:  DMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW

P42793 60S ribosomal protein L5, mitochondrial7.0e-2290.74Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET
        METEFCE SPELEDHFEIFEHI GFNVTI+TSANTQDETL  WSGFLQKDEGET
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET

P49387 Ribosomal protein S14, mitochondrial2.0e-2482.86Show/hide
Query:  KDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW
        KD     DMRDKHR KLSKLPR SSFARVRN CISTGRPR V EFFRI RIVFRGLASRGSL+GIKKSSW
Subjt:  KDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW

P49388 60S ribosomal protein L5, mitochondrial4.1e-2288.89Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET
        METEFCE +P+L+DHFEIFEHI GFNVTIVTSANTQDETLP WSGFLQKDEGET
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET

P51409 60S ribosomal protein L5, mitochondrial5.4e-2292.59Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET
        METEFCE SPELEDHFEIFEHI GFNVTIVTSANTQDETL  WSGFLQKDEGET
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET

Arabidopsis top hitse value%identityAlignment
AT2G07725.1 Ribosomal L5P family protein3.4e-2492.59Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET
        METEFCE SPELEDHFEIFEHI GFNVTI+TSANTQDETLP WSGFLQKDEGET
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET

AT2G34520.1 mitochondrial ribosomal protein S141.8e-2067.14Show/hide
Query:  KDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW
        KD     +MRDK+R KLSKLPR S+FAR+RN C+ TGR R V E FR+SRIVFRGLAS+G+L+GI KSSW
Subjt:  KDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSLIGIKKSSW

ATMG00210.1 ribosomal protein L53.4e-2492.59Show/hide
Query:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET
        METEFCE SPELEDHFEIFEHI GFNVTI+TSANTQDETLP WSGFLQKDEGET
Subjt:  METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACGGAGTTTTGCGAATTATCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGA
TGAGACTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGGGGGAAACTCATGATATGCGGGACAAACATCGTGAGAAGTTGTCCAAGTTGCCAAGAAAGAGTTCCT
TTGCACGAGTAAGAAACCTATGTATTTCCACGGGTCGCCCTCGTGGAGTAGATGAGTTCTTTCGAATTTCTCGTATCGTTTTTCGTGGATTAGCATCTCGAGGTTCTTTG
ATAGGCATAAAGAAATCGTCTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAACGGAGTTTTGCGAATTATCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGA
TGAGACTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGGGGGAAACTCATGATATGCGGGACAAACATCGTGAGAAGTTGTCCAAGTTGCCAAGAAAGAGTTCCT
TTGCACGAGTAAGAAACCTATGTATTTCCACGGGTCGCCCTCGTGGAGTAGATGAGTTCTTTCGAATTTCTCGTATCGTTTTTCGTGGATTAGCATCTCGAGGTTCTTTG
ATAGGCATAAAGAAATCGTCTTGGTAG
Protein sequenceShow/hide protein sequence
METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETHDMRDKHREKLSKLPRKSSFARVRNLCISTGRPRGVDEFFRISRIVFRGLASRGSL
IGIKKSSW