; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G003170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor IBH1
Genome locationchr08:8328002..8328472
RNA-Seq ExpressionLsi08G003170
SyntenyLsi08G003170
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]4.1e-4370.51Show/hide
Query:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT
        MASKS  T + STSS LR ARTFLRSF+ IKSQ     AI PS PEL+R+SRRIKM AYSSMAR AGPR AWARALLF+L+ RARHRTL+ RRR      
Subjt:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT

Query:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN
           RSDD+V KLRRL+PGG++MDVCTLLEET  YI CLS QVKVMKAI DHQ STN
Subjt:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-4475Show/hide
Query:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT
        MAS+S  T MNS+SS LR ARTFLRSFS+IKS+R  TAA S S  EL+R+SRRIK+AAYSSMARVAGP+RAWARALLF+L  RARH TLM  RR RSTM 
Subjt:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT

Query:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN
        PS   DD V KLRRLLPGGD MDVCTLLEETA+YIHCLS QVKVM AI+ H LSTN
Subjt:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]7.0e-5179.74Show/hide
Query:  SKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPS
        SKS+ITL+NSTSSR RFARTFLR FS+IKSQRSAT A +P   +LKRQS+RIKM AYSSMARVAGPRRAWARALLF+LQ R RHRTLM R+R      PS
Subjt:  SKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPS

Query:  TRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLST
        T  DDQV KLRRLLPGG+TMDVCTLLEETANYIHCLSTQVKVMKAISD  LST
Subjt:  TRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLST

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]1.0e-4172.44Show/hide
Query:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT
        MA +S IT MNS+SS LR ARTFLRSFS+IKS+R  TAA S S  EL+R+SRRIK+AAYSSMARVAGP+R WARALLF+L  RARHRT M  RR  STM 
Subjt:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT

Query:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN
        PS   DD V KLRRL+PGGD MDVCTLLEETA+YIHCLS QVKVM AI+ H LS N
Subjt:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN

XP_023548405.1 transcription factor IBH1 [Cucurbita pepo subsp. pepo]5.4e-4370.51Show/hide
Query:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT
        MASKS  T + STS+ LR ARTFLRSF+ IKSQ     AI PS PELKRQSRRIKM AYSSMAR AGPR AWARALLF+L+MRARHRTL+ RRR      
Subjt:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT

Query:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN
            SDD+V KLRRL+PGG+ MDVC+LLEET  YI CL TQVKVMKAI DHQ STN
Subjt:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein3.8e-4273.03Show/hide
Query:  SKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPS
        SKS+ITL+NSTSSRL FART            SAT A +P   +LKRQSRRIKMAAYSSMARVAG RRAWARALLFRL  R RH+TLM R+R      PS
Subjt:  SKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPS

Query:  TRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLS
        T SDD V KLRRLLPGG+TMDVCTLLEETANYIHCLSTQVKVMKAIS+H LS
Subjt:  TRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLS

A0A1S3CLD3 transcription factor IBH13.4e-5179.74Show/hide
Query:  SKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPS
        SKS+ITL+NSTSSR RFARTFLR FS+IKSQRSAT A +P   +LKRQS+RIKM AYSSMARVAGPRRAWARALLF+LQ R RHRTLM R+R      PS
Subjt:  SKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPS

Query:  TRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLST
        T  DDQV KLRRLLPGG+TMDVCTLLEETANYIHCLSTQVKVMKAISD  LST
Subjt:  TRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLST

A0A2N9I4P0 Uncharacterized protein3.1e-2850.68Show/hide
Query:  MNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRG------RSTMTPST
        +N+ S R++FAR F+R+ SK+K     TA  S S  E++++S+RIK+AAYSSMA   G ++AW+RA+LF+L+ RARH+ +M+RRR       R+      
Subjt:  MNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRG------RSTMTPST

Query:  RSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDH
           +Q +KLR+L+PGG  MD+C+LLEETA+YI CLSTQVKVM+ I+DH
Subjt:  RSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDH

A0A5D3BPL2 Transcription factor IBH13.4e-5179.74Show/hide
Query:  SKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPS
        SKS+ITL+NSTSSR RFARTFLR FS+IKSQRSAT A +P   +LKRQS+RIKM AYSSMARVAGPRRAWARALLF+LQ R RHRTLM R+R      PS
Subjt:  SKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPS

Query:  TRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLST
        T  DDQV KLRRLLPGG+TMDVCTLLEETANYIHCLSTQVKVMKAISD  LST
Subjt:  TRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLST

A0A6J1KS83 transcription factor IBH14.9e-4272.44Show/hide
Query:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT
        MA +S IT MNS+SS LR ARTFLRSFS+IKS+R  TAA S S  EL+R+SRRIK+AAYSSMARVAGP+R WARALLF+L  RARHRT M  RR  STM 
Subjt:  MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMT

Query:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN
        PS   DD V KLRRL+PGGD MDVCTLLEETA+YIHCLS QVKVM AI+ H LS N
Subjt:  PSTRSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH11.1e-1139.6Show/hide
Query:  ATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLM------IRRRGRSTMTPSTRSDDQVR-------------------
        A + I  +TP + R++R I+ AAYSSMAR A PRRAW+RALL + + R R RTLM      +RRR  +   PS  S   VR                   
Subjt:  ATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLM------IRRRGRSTMTPSTRSDDQVR-------------------

Query:  ---------KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISD
                  LRRL+PGG  M+  +LLEETA+Y+  L  QV++M+ + D
Subjt:  ---------KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISD

Q7XR02 Transcription factor IBH16.6e-1239.6Show/hide
Query:  ATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLM------IRRRGRSTMTPSTRSDDQVR-------------------
        A + I  +TP + R++R I+ AAYSSMAR A PRRAW+RALL +++ R R RTLM      +RRR  +   PS  S   VR                   
Subjt:  ATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLM------IRRRGRSTMTPSTRSDDQVR-------------------

Query:  ---------KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISD
                  LRRL+PGG  M+  +LLEETA+Y+  L  QV++M+ + D
Subjt:  ---------KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISD

Q9SKX1 Transcription factor IBH12.5e-1140Show/hide
Query:  FARTFLRSFSKIKSQRSATAAISPSTPELKR-QSRRIKMAAYSSMARVA-GPRRAWARALLFRLQ------MRARHRTLMIRRRGRSTMTPSTRSDDQVR
        FA  FL+S S ++ Q          TP+ K  + R+IK AAY SMAR A G  R W+RALL R        +R   R   I  + R +   +   ++   
Subjt:  FARTFLRSFSKIKSQRSATAAISPSTPELKR-QSRRIKMAAYSSMARVA-GPRRAWARALLFRLQ------MRARHRTLMIRRRGRSTMTPSTRSDDQVR

Query:  KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISD
        +LR L+PGG  M+   L+EETA+YI CLS QVKVM+ + D
Subjt:  KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISD

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 11.8e-1240Show/hide
Query:  FARTFLRSFSKIKSQRSATAAISPSTPELKR-QSRRIKMAAYSSMARVA-GPRRAWARALLFRLQ------MRARHRTLMIRRRGRSTMTPSTRSDDQVR
        FA  FL+S S ++ Q          TP+ K  + R+IK AAY SMAR A G  R W+RALL R        +R   R   I  + R +   +   ++   
Subjt:  FARTFLRSFSKIKSQRSATAAISPSTPELKR-QSRRIKMAAYSSMARVA-GPRRAWARALLFRLQ------MRARHRTLMIRRRGRSTMTPSTRSDDQVR

Query:  KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISD
        +LR L+PGG  M+   L+EETA+YI CLS QVKVM+ + D
Subjt:  KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISD

AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.4e-0437.74Show/hide
Query:  RSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN
        R  +++R L+ L+PGG  MD  ++L+E ANY+  L  QVK ++ +      TN
Subjt:  RSDDQVRKLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTAAATCAAGTATAACCCTAATGAATTCCACCTCGTCCCGGCTCCGTTTCGCTCGAACGTTCCTCCGATCGTTCTCCAAAATAAAATCTCAAAGATCCGCCAC
CGCTGCCATCTCTCCGTCGACTCCAGAGCTCAAACGCCAGAGTCGACGGATAAAGATGGCTGCATACTCGTCCATGGCTCGCGTCGCGGGGCCAAGGAGAGCTTGGGCTA
GAGCCCTGCTCTTCAGGCTCCAGATGCGAGCTAGACACCGGACTCTGATGATAAGACGCCGTGGCCGCTCGACGATGACACCCTCGACTCGCTCAGATGATCAAGTCAGG
AAGCTTCGCCGCTTGCTCCCCGGTGGCGATACGATGGACGTGTGCACTTTGCTGGAGGAAACTGCCAATTACATCCATTGCTTGTCCACACAAGTTAAGGTGATGAAAGC
CATATCTGATCATCAGTTGTCAACAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTAAATCAAGTATAACCCTAATGAATTCCACCTCGTCCCGGCTCCGTTTCGCTCGAACGTTCCTCCGATCGTTCTCCAAAATAAAATCTCAAAGATCCGCCAC
CGCTGCCATCTCTCCGTCGACTCCAGAGCTCAAACGCCAGAGTCGACGGATAAAGATGGCTGCATACTCGTCCATGGCTCGCGTCGCGGGGCCAAGGAGAGCTTGGGCTA
GAGCCCTGCTCTTCAGGCTCCAGATGCGAGCTAGACACCGGACTCTGATGATAAGACGCCGTGGCCGCTCGACGATGACACCCTCGACTCGCTCAGATGATCAAGTCAGG
AAGCTTCGCCGCTTGCTCCCCGGTGGCGATACGATGGACGTGTGCACTTTGCTGGAGGAAACTGCCAATTACATCCATTGCTTGTCCACACAAGTTAAGGTGATGAAAGC
CATATCTGATCATCAGTTGTCAACAAATTGA
Protein sequenceShow/hide protein sequence
MASKSSITLMNSTSSRLRFARTFLRSFSKIKSQRSATAAISPSTPELKRQSRRIKMAAYSSMARVAGPRRAWARALLFRLQMRARHRTLMIRRRGRSTMTPSTRSDDQVR
KLRRLLPGGDTMDVCTLLEETANYIHCLSTQVKVMKAISDHQLSTN