; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G003190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003190
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpolcalcin Syr v 3-like
Genome locationchr08:8365794..8366048
RNA-Seq ExpressionLsi08G003190
SyntenyLsi08G003190
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445690.1 PREDICTED: polcalcin Syr v 3-like [Cucumis melo]1.6e-3389.29Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MADS+G ++ECERIFKRFD NGDGKISLSELETALHALG S+PEEV RRMSEIDKDGNGFISL+ELCDFQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

XP_022929895.1 polcalcin Phl p 7-like [Cucurbita moschata]4.2e-3488.1Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MA+SE +R ECERIF RFD NGDGKISLSELE ALHALG SSPEEV RRMSEIDKDGNGFISLDELC+FQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

XP_022992461.1 polcalcin Phl p 7-like [Cucurbita maxima]3.5e-3388.1Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MA+SE IR ECERIF RFD NGDGKISLSELE ALHALG SSPEEV RRMSEIDKDGNGFISLDEL +FQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

XP_023549323.1 polcalcin Phl p 7-like [Cucurbita pepo subsp. pepo]4.2e-3488.1Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MA+SE IR ECERIF RFD NGDGKISLSELE ALHALG SSPEEV RRMSEIDKDGNGFISLDELC+FQRANPDLMKEVC+RL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

XP_038886760.1 polcalcin Phl p 7-like [Benincasa hispida]6.5e-3591.67Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MADSEG R ECERIFKRFDS+GDGKISLSELE+AL ALG SSPEEV RRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

TrEMBL top hitse value%identityAlignment
A0A0A0KAW9 Uncharacterized protein2.0e-3488.1Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MADS+G R+ECERIFKRFD NGDGKISLSELE ALHALG S+PEEV RRMSEIDKDGNG+ISL+ELCDFQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

A0A1S3BDB5 polcalcin Syr v 3-like7.7e-3489.29Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MADS+G ++ECERIFKRFD NGDGKISLSELETALHALG S+PEEV RRMSEIDKDGNGFISL+ELCDFQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

A0A5A7V7E6 Polcalcin Syr v 3-like7.7e-3489.29Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MADS+G ++ECERIFKRFD NGDGKISLSELETALHALG S+PEEV RRMSEIDKDGNGFISL+ELCDFQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

A0A6J1EVJ6 polcalcin Phl p 7-like2.0e-3488.1Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MA+SE +R ECERIF RFD NGDGKISLSELE ALHALG SSPEEV RRMSEIDKDGNGFISLDELC+FQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

A0A6J1JTM0 polcalcin Phl p 7-like1.7e-3388.1Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL
        MA+SE IR ECERIF RFD NGDGKISLSELE ALHALG SSPEEV RRMSEIDKDGNGFISLDEL +FQRANPDLMKEVCKRL
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 31.5e-1858.54Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK
        MAD      E ERIFKRFD+NGDGKIS SEL   L  LG  +PEE+ R M+EID DG+GFIS +E   F RAN  L+K+V K
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK

O82040 Polcalcin Phl p 75.2e-1963.01Show/hide
Query:  ECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK
        + ERIFKRFD+NGDGKISLSEL  AL  LG +S +EV R M+EID DG+GFI  +E   F  ANP LMK+V K
Subjt:  ECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK

P58171 Polcalcin Syr v 36.7e-1963.01Show/hide
Query:  ECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK
        E ERIFKRFD+NGDGKIS SEL   L  LG  +PEE+ R M+EID DG+GFIS +E  DF RAN  L+K+V K
Subjt:  ECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK

P94092 Polcalcin Cyn d 71.1e-1861.64Show/hide
Query:  ECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK
        + E IFKRFD+NGDGKISL+EL  AL  LG +S +EV R M+EID DG+GFI  DE   F  ANP LMK+V K
Subjt:  ECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK

Q84V36 Polcalcin Che a 35.2e-1966.2Show/hide
Query:  ERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK
        ERIFKRFD+NGDGKIS SEL  AL  LG  +P+EV R M+EID DG+GFIS DE  DF RAN  L+K+V K
Subjt:  ERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK

Arabidopsis top hitse value%identityAlignment
AT1G24620.1 EF hand calcium-binding protein family2.9e-0941.79Show/hide
Query:  ECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRR-MSEIDKDGNGFISLDELCDFQRANPD
        E E +FK+FD NGDGKIS  EL   + +LG   PEE + + ++EID+ G+G+I+ +E  +      D
Subjt:  ECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRR-MSEIDKDGNGFISLDELCDFQRANPD

AT1G66400.1 calmodulin like 231.3e-0949.18Show/hide
Query:  GIRVECERIFKRFDSNGDGKISLSELETALHALG-CSSPEEVMRRMSEIDKDGNGFISLDE
        G   + +++F+RFD N DGKIS+ EL+  + AL   +S EE    M E D DGNGFI LDE
Subjt:  GIRVECERIFKRFDSNGDGKISLSELETALHALG-CSSPEEVMRRMSEIDKDGNGFISLDE

AT3G03430.1 Calcium-binding EF-hand family protein3.8e-1753.66Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK
        MAD+   + E +RIFK+FD+NGDGKIS +EL  AL  LG  + E++ R M+EID DG+G+IS  E  DF  AN  LMK+V K
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK

AT5G17480.1 pollen calcium-binding protein 12.9e-1754.88Show/hide
Query:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK
        MAD+   + E +RIFK+FD+NGDGKIS +ELE AL  LG  + ++V R M+EID DG+G IS  E  DF  AN  LMK+V K
Subjt:  MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCK

AT5G37770.1 EF hand calcium-binding protein family3.1e-1152.63Show/hide
Query:  ECERIFKRFDSNGDGKISLSELETALHALG-CSSPEEVMRRMSEIDKDGNGFISLDE
        + +++F+RFD NGDGKIS+ EL+  + AL   +SPEE +  M + D DGNGFI LDE
Subjt:  ECERIFKRFDSNGDGKISLSELETALHALG-CSSPEEVMRRMSEIDKDGNGFISLDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACTCAGAAGGAATCAGAGTGGAATGCGAGCGAATCTTTAAGCGCTTCGACAGCAATGGCGATGGGAAGATCTCGCTGTCGGAGCTAGAAACCGCTCTGCACGC
GCTTGGTTGCTCCTCGCCGGAAGAGGTGATGCGACGGATGTCGGAAATCGACAAAGACGGCAACGGCTTCATTTCGCTTGACGAACTCTGCGATTTTCAAAGGGCTAATC
CTGATTTGATGAAGGAAGTTTGCAAGAGGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACTCAGAAGGAATCAGAGTGGAATGCGAGCGAATCTTTAAGCGCTTCGACAGCAATGGCGATGGGAAGATCTCGCTGTCGGAGCTAGAAACCGCTCTGCACGC
GCTTGGTTGCTCCTCGCCGGAAGAGGTGATGCGACGGATGTCGGAAATCGACAAAGACGGCAACGGCTTCATTTCGCTTGACGAACTCTGCGATTTTCAAAGGGCTAATC
CTGATTTGATGAAGGAAGTTTGCAAGAGGCTTTAG
Protein sequenceShow/hide protein sequence
MADSEGIRVECERIFKRFDSNGDGKISLSELETALHALGCSSPEEVMRRMSEIDKDGNGFISLDELCDFQRANPDLMKEVCKRL