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Lsi08G003530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S15a
Genome locationchr08:9685503..9704262
RNA-Seq ExpressionLsi08G003530
SyntenyLsi08G003530
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR035987 - Ribosomal protein S8 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140873.1 40S ribosomal protein S15a-2 [Cucumis sativus]5.9e-0784.38Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGYVVITTPEGILDHEEAMKRNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
XP_008445702.1 PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo]5.9e-0784.38Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGYVVITTPEGILDHEEAMKRNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
XP_022150338.1 40S ribosomal protein S15a-5-like isoform X2 [Momordica charantia]1.7e-0681.25Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGYVVITTPEGILDHEEAM+RNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
XP_031407470.1 40S ribosomal protein S15a-5-like [Punica granatum]1.7e-0647.69Show/hide
Query:  RSFLFRRSVSSRVVSLKLGLSQPFRVFS-SASPWGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        R+ ++R+ + +R +       + +RV +     WGYVV+TTPEGILDHEEAMKRNVGGQ+    H
Subjt:  RSFLFRRSVSSRVVSLKLGLSQPFRVFS-SASPWGYVVITTPEGILDHEEAMKRNVGGQMFPILH
XP_038884441.1 40S ribosomal protein S15a-5-like [Benincasa hispida]5.9e-0784.38Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGYVVITTPEGILDHEEAMKRNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
TrEMBL top hitse value%identityAlignment
A0A0A0KDZ7 Uncharacterized protein2.9e-0784.38Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGYVVITTPEGILDHEEAMKRNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
A0A1S3BDC0 40S ribosomal protein S15a-2-like2.9e-0784.38Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGYVVITTPEGILDHEEAMKRNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
A0A218XRV3 40S ribosomal protein S15a-5-like8.3e-0747.69Show/hide
Query:  RSFLFRRSVSSRVVSLKLGLSQPFRVFS-SASPWGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        R+ ++R+ + +R +       + +RV +     WGYVV+TTPEGILDHEEAMKRNVGGQ+    H
Subjt:  RSFLFRRSVSSRVVSLKLGLSQPFRVFS-SASPWGYVVITTPEGILDHEEAMKRNVGGQMFPILH
A0A5D3D2U5 40S ribosomal protein S15a-2-like2.9e-0784.38Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGYVVITTPEGILDHEEAMKRNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
A0A6J1D967 40S ribosomal protein S15a-5-like isoform X28.3e-0781.25Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGYVVITTPEGILDHEEAM+RNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
SwissProt top hitse value%identityAlignment
O80646 40S ribosomal protein S15a-33.7e-0462.96Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQM
        +GY+V+TT  GI+DHEEA K+NVGG++
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQM
O82205 40S ribosomal protein S15a-26.5e-0975Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGY+VITTP+GILDHEEA+KRNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
P42798 40S ribosomal protein S15a-18.3e-0459.26Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQM
        +GY+V+TT  GI+DHEEA ++NVGG++
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQM
Q00332 40S ribosomal protein S15a8.3e-0459.26Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQM
        +GY+V+TT  GI+DHEEA ++NVGG++
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQM
Q9M0E0 40S ribosomal protein S15a-53.2e-0888.89Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQM
        WGYVVITTP+GILDHEEA+KRNVGGQ+
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQM
Arabidopsis top hitse value%identityAlignment
AT1G07770.1 ribosomal protein S15A5.9e-0559.26Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQM
        +GY+V+TT  GI+DHEEA ++NVGG++
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQM
AT1G07770.2 ribosomal protein S15A5.9e-0559.26Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQM
        +GY+V+TT  GI+DHEEA ++NVGG++
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQM
AT2G19720.1 ribosomal protein S15A B4.7e-1075Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
        WGY+VITTP+GILDHEEA+KRNVGGQ+    H
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQMFPILH
AT2G39590.1 Ribosomal protein S8 family protein2.6e-0562.96Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQM
        +GY+V+TT  GI+DHEEA K+NVGG++
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQM
AT4G29430.1 ribosomal protein S15A E2.3e-0988.89Show/hide
Query:  WGYVVITTPEGILDHEEAMKRNVGGQM
        WGYVVITTP+GILDHEEA+KRNVGGQ+
Subjt:  WGYVVITTPEGILDHEEAMKRNVGGQM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCCTTCAAAAGGCTAATCCCCAAAGCAAGTGAACTGGCTCCTCTCCGGTCCTTTCTCTTCCGCCGATCAGTTAGTTCTCGAGTCGTCTCTCTCAAGCTAGGGCT
GAGCCAACCATTCCGCGTTTTCTCGTCTGCTTCGCCGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCTTGGATCATGAAGAGGCAATGAAAAGGAATGTTGGAG
GTCAGATGTTTCCCATATTGCATTGGGATCTTCTTATGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCCTTCAAAAGGCTAATCCCCAAAGCAAGTGAACTGGCTCCTCTCCGGTCCTTTCTCTTCCGCCGATCAGTTAGTTCTCGAGTCGTCTCTCTCAAGCTAGGGCT
GAGCCAACCATTCCGCGTTTTCTCGTCTGCTTCGCCGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCTTGGATCATGAAGAGGCAATGAAAAGGAATGTTGGAG
GTCAGATGTTTCCCATATTGCATTGGGATCTTCTTATGGCTTAG
Protein sequenceShow/hide protein sequence
MAPFKRLIPKASELAPLRSFLFRRSVSSRVVSLKLGLSQPFRVFSSASPWGYVVITTPEGILDHEEAMKRNVGGQMFPILHWDLLMA