; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G003640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003640
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S15a-1
Genome locationchr08:10006188..10007508
RNA-Seq ExpressionLsi08G003640
SyntenyLsi08G003640
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445716.1 PREDICTED: uncharacterized protein LOC103488666 isoform X1 [Cucumis melo]1.5e-3193.06Show/hide
Query:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK
        QELDGICHKNNWILPVYGVSSLDGGFQANVF+KGMDFEYSSCGE CSDPR+ARESAA KMLGQLWRMAN AK
Subjt:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK

XP_011656540.1 uncharacterized protein LOC101206764 isoform X1 [Cucumis sativus]5.7e-3192.96Show/hide
Query:  ELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK
        ELDGICHKNNWILPVYGVSSLDGGFQANVF+KGMDFEYSSC E CSDPR+ARESAA KMLGQLWRMANLAK
Subjt:  ELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK

XP_031742612.1 uncharacterized protein LOC101206764 isoform X2 [Cucumis sativus]5.7e-3192.96Show/hide
Query:  ELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK
        ELDGICHKNNWILPVYGVSSLDGGFQANVF+KGMDFEYSSC E CSDPR+ARESAA KMLGQLWRMANLAK
Subjt:  ELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK

XP_038884894.1 uncharacterized protein LOC120075512 isoform X1 [Benincasa hispida]1.4e-2987.5Show/hide
Query:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK
        +ELDGICHKN WILPVYGVSS+DGGFQANVF+KGMDFEYSSCGE CSDPREARESAA KMLGQLWRMA++ K
Subjt:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK

XP_038884898.1 uncharacterized protein LOC120075512 isoform X4 [Benincasa hispida]1.4e-2987.5Show/hide
Query:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK
        +ELDGICHKN WILPVYGVSS+DGGFQANVF+KGMDFEYSSCGE CSDPREARESAA KMLGQLWRMA++ K
Subjt:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK

TrEMBL top hitse value%identityAlignment
A0A0A0KE35 Uncharacterized protein2.7e-3192.96Show/hide
Query:  ELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK
        ELDGICHKNNWILPVYGVSSLDGGFQANVF+KGMDFEYSSC E CSDPR+ARESAA KMLGQLWRMANLAK
Subjt:  ELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK

A0A1S3BE29 uncharacterized protein LOC103488666 isoform X17.2e-3293.06Show/hide
Query:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK
        QELDGICHKNNWILPVYGVSSLDGGFQANVF+KGMDFEYSSCGE CSDPR+ARESAA KMLGQLWRMAN AK
Subjt:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK

A0A6J1DAH9 uncharacterized protein LOC111018541 isoform X12.7e-2679.17Show/hide
Query:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK
        QELD ICHKNNWILPVY +SS DGGFQANVF+KG+DFEYSSC E CS+PREAR SAATKMLGQLW +A+  K
Subjt:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK

A0A6J1JP19 uncharacterized protein LOC111488583 isoform X22.0e-2688.24Show/hide
Query:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMA
        QELD ICHKNNWILPVYGVSS DGGFQANV LKGMDFEYSS GE C +PREARESAA KMLGQLWRMA
Subjt:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMA

A0A6J1JUZ0 uncharacterized protein LOC111488583 isoform X12.0e-2688.24Show/hide
Query:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMA
        QELD ICHKNNWILPVYGVSS DGGFQANV LKGMDFEYSS GE C +PREARESAA KMLGQLWRMA
Subjt:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05950.1 unknown protein5.9e-1048.44Show/hide
Query:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQL
        Q LD IC  NNW+LP Y V+  DGG++A V + G     +  GE  SD  EARESAA  +L +L
Subjt:  QELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGTAAATGTAATGATGCTCTGTTGACTTGGCAGGAACTGGATGGTATATGTCATAAGAATAATTGGATATTGCCAGTTTACGGAGTTTCGTCATTAGATGGTGG
ATTCCAAGCTAATGTATTTTTAAAAGGGATGGATTTTGAGTATTCAAGCTGTGGCGAGCCGTGTTCCGACCCCCGTGAAGCGAGGGAATCAGCTGCAACGAAGATGTTAG
GTCAACTATGGAGGATGGCAAATCTGGCCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATTGTAAATGTAATGATGCTCTGTTGACTTGGCAGGAACTGGATGGTATATGTCATAAGAATAATTGGATATTGCCAGTTTACGGAGTTTCGTCATTAGATGGTGG
ATTCCAAGCTAATGTATTTTTAAAAGGGATGGATTTTGAGTATTCAAGCTGTGGCGAGCCGTGTTCCGACCCCCGTGAAGCGAGGGAATCAGCTGCAACGAAGATGTTAG
GTCAACTATGGAGGATGGCAAATCTGGCCAAGTAGTTTTAGGAGCTTTGAAGAAGGATGTTGTAGTATGTTTTGCCCCTAATGGATCTGTTTTTGGGCTCTCCAGGGAGG
AAAGGGGGAAAGAGAAGCTTATGCTCTCCAAGATCGTGTAGTCTGATGTAGTTTTTTTT
Protein sequenceShow/hide protein sequence
MHCKCNDALLTWQELDGICHKNNWILPVYGVSSLDGGFQANVFLKGMDFEYSSCGEPCSDPREARESAATKMLGQLWRMANLAK