; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G003670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease H
Genome locationchr08:10061797..10062684
RNA-Seq ExpressionLsi08G003670
SyntenyLsi08G003670
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]2.2e-7958.42Show/hide
Query:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD
        S G+ P +  + +KFSVEGGQ IVYGEEDMFVTKTS LPY+EA EEA  CSYRSFE ANATIFPTEGL + RY+S+TSL++A TMI+SG+QMH GLGK +
Subjt:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD

Query:  QRNPEVISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLV--
        Q + EVISLPKAKEKFGLGYK  TS+ EK   ++++KRSA L G E+++ R+ IPHLSETFK GELLF+  Q +   ++ +  +AV+S+NT     LV  
Subjt:  QRNPEVISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLV--

Query:  ------------EKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
                    +K   +TK   K+   E  +D+ VDFEVPICNLEQN+ E E DISPELLR+IEQEEKKT+ YQE L V+N GT EE +E
Subjt:  ------------EKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

KAA0043020.1 uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]1.9e-7856.7Show/hide
Query:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD
        S G+ P    + +KFSVEGGQ IVYGE++MFVTK STLPY+EA EEA  CSYRSFE+ANATIFP EGL + RY+S+TSL++A TMI+S +QMH GLGK +
Subjt:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD

Query:  QRNPEVISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLV--
        Q + +VISLPKAKEKFGLGYK   S+WEK   ++++KRS  L G E+++ R+ IPHL ETFKP ELLF+  Q +   ++ + S+AV+S+NT  S  LV  
Subjt:  QRNPEVISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLV--

Query:  ------------EKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
                    +K   +TK   K    E  +D++VDF+VPICNLEQN+E  E DISPELLR+IEQEEKKT+ YQE L+V+NLGTL+E +E
Subjt:  ------------EKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

KAA0052108.1 uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa]1.0e-6052.11Show/hide
Query:  PLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPE
        P +  + +KFSVEGGQ IVY EEDMFVTKTSTLPY+EA EEA  CSYRSFE+ANATIFPT                                  +Q + E
Subjt:  PLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPE

Query:  VISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS---
        VISL KAKEKFGLGYK   S+WEK   ++++KRSA L G E+++ R+ IPHLSETFKP ELLF+  Q +    + + S+ V+S+NT     LV +     
Subjt:  VISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS---

Query:  -----SITKVLPKDAGD----ENYIDEIVDFEVPICNLEQNMEE-ECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
              I K L    G     E  +D+ VDFEVPICNLEQN+EE E DISPEL R+IEQEEKKT+PYQE L+V+NLGTLEE +E
Subjt:  -----SITKVLPKDAGD----ENYIDEIVDFEVPICNLEQNMEE-ECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]2.2e-6358.3Show/hide
Query:  GCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRK---KRSACLEGLEVE
        GCSYRSFE+ANATIFPTEGL + RY+S+TSL++A TMI+SG+QMH GLGK +Q + EVISLPKAKEKFGLGYK  TS+WEK R K   KRSA L G E++
Subjt:  GCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRK---KRSACLEGLEVE

Query:  QGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS--------SITKVLPKDAGD----------ENYIDEIVDFEVPICN
        + R+ IPHLSETFK GELLF+  Q +   ++ + S+ V+S+NT     LV K           I K L    G           E  +D+ VDFEVPICN
Subjt:  QGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS--------SITKVLPKDAGD----------ENYIDEIVDFEVPICN

Query:  LEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
        LEQN+ E E DISPELLR+IEQEEKKT+PYQE L+V+NLGT EE +E
Subjt:  LEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

TYK06500.1 uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa]4.0e-6553.65Show/hide
Query:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD
        S G+ P    + +KFSVEGGQ IVYGE++MFVTKTSTLPY+EA EEA  CSYRSFE+ANATIFP EGL + RY+S+TSL++  TMI+S +QMH GLGK +
Subjt:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD

Query:  QRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMSS
        QR+ +VISLPKAKEKFGLGYK   S+WEKR+R+           E   + I  +SE       L +     +C+  F+ +   I K              
Subjt:  QRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMSS

Query:  ITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
        +TK   K    E  +D+IVDF+VPICNLEQN+E  E DISPELLR+IEQEEKKT+ YQE L+V+NLGTL+E +E
Subjt:  ITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase1.1e-7958.42Show/hide
Query:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD
        S G+ P +  + +KFSVEGGQ IVYGEEDMFVTKTS LPY+EA EEA  CSYRSFE ANATIFPTEGL + RY+S+TSL++A TMI+SG+QMH GLGK +
Subjt:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD

Query:  QRNPEVISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLV--
        Q + EVISLPKAKEKFGLGYK  TS+ EK   ++++KRSA L G E+++ R+ IPHLSETFK GELLF+  Q +   ++ +  +AV+S+NT     LV  
Subjt:  QRNPEVISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLV--

Query:  ------------EKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
                    +K   +TK   K+   E  +D+ VDFEVPICNLEQN+ E E DISPELLR+IEQEEKKT+ YQE L V+N GT EE +E
Subjt:  ------------EKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

A0A5A7TI68 Uncharacterized protein9.0e-7956.7Show/hide
Query:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD
        S G+ P    + +KFSVEGGQ IVYGE++MFVTK STLPY+EA EEA  CSYRSFE+ANATIFP EGL + RY+S+TSL++A TMI+S +QMH GLGK +
Subjt:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD

Query:  QRNPEVISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLV--
        Q + +VISLPKAKEKFGLGYK   S+WEK   ++++KRS  L G E+++ R+ IPHL ETFKP ELLF+  Q +   ++ + S+AV+S+NT  S  LV  
Subjt:  QRNPEVISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLV--

Query:  ------------EKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
                    +K   +TK   K    E  +D++VDF+VPICNLEQN+E  E DISPELLR+IEQEEKKT+ YQE L+V+NLGTL+E +E
Subjt:  ------------EKMSSITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

A0A5A7UA36 Reverse transcriptase domain-containing protein4.9e-6152.11Show/hide
Query:  PLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPE
        P +  + +KFSVEGGQ IVY EEDMFVTKTSTLPY+EA EEA  CSYRSFE+ANATIFPT                                  +Q + E
Subjt:  PLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPE

Query:  VISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS---
        VISL KAKEKFGLGYK   S+WEK   ++++KRSA L G E+++ R+ IPHLSETFKP ELLF+  Q +    + + S+ V+S+NT     LV +     
Subjt:  VISLPKAKEKFGLGYKSTTSKWEK---RRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS---

Query:  -----SITKVLPKDAGD----ENYIDEIVDFEVPICNLEQNMEE-ECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
              I K L    G     E  +D+ VDFEVPICNLEQN+EE E DISPEL R+IEQEEKKT+PYQE L+V+NLGTLEE +E
Subjt:  -----SITKVLPKDAGD----ENYIDEIVDFEVPICNLEQNMEE-ECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

A0A5A7VAU5 Uncharacterized protein1.1e-6358.3Show/hide
Query:  GCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRK---KRSACLEGLEVE
        GCSYRSFE+ANATIFPTEGL + RY+S+TSL++A TMI+SG+QMH GLGK +Q + EVISLPKAKEKFGLGYK  TS+WEK R K   KRSA L G E++
Subjt:  GCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRK---KRSACLEGLEVE

Query:  QGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS--------SITKVLPKDAGD----------ENYIDEIVDFEVPICN
        + R+ IPHLSETFK GELLF+  Q +   ++ + S+ V+S+NT     LV K           I K L    G           E  +D+ VDFEVPICN
Subjt:  QGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMS--------SITKVLPKDAGD----------ENYIDEIVDFEVPICN

Query:  LEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
        LEQN+ E E DISPELLR+IEQEEKKT+PYQE L+V+NLGT EE +E
Subjt:  LEQNM-EEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

A0A5D3C587 Retrotrans_gag domain-containing protein1.9e-6553.65Show/hide
Query:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD
        S G+ P    + +KFSVEGGQ IVYGE++MFVTKTSTLPY+EA EEA  CSYRSFE+ANATIFP EGL + RY+S+TSL++  TMI+S +QMH GLGK +
Subjt:  SRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCD

Query:  QRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMSS
        QR+ +VISLPKAKEKFGLGYK   S+WEKR+R+           E   + I  +SE       L +     +C+  F+ +   I K              
Subjt:  QRNPEVISLPKAKEKFGLGYKSTTSKWEKRRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMSS

Query:  ITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE
        +TK   K    E  +D+IVDF+VPICNLEQN+E  E DISPELLR+IEQEEKKT+ YQE L+V+NLGTL+E +E
Subjt:  ITKVLPKDAGDENYIDEIVDFEVPICNLEQNME-EECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTTGGATCCGCTCAGCAGGGGCAGTCCCCCCCTCACTACATCAAAGGGTGTAAAGTTCAGCGTGGAAGGTGGTCAGGTCATTGTTTATGGGGAGGAAGACATGTT
TGTCACAAAAACGTCAACACTTCCTTATATTGAAGCAGCAGAAGAAGCTTTTGGGTGCTCTTACAGATCATTTGAAGTCGCTAATGCTACTATCTTTCCAACTGAAGGTT
TGGATATTGGTCGTTATATGTCTCGAACATCTCTAGTGGTGGCAACAACGATGATAAGGAGTGGTTATCAAATGCACGGAGGTTTGGGAAAGTGCGATCAAAGAAACCCA
GAGGTGATTTCTCTTCCTAAGGCTAAGGAAAAGTTTGGATTAGGGTATAAGTCAACAACTTCTAAATGGGAGAAGAGAAGAAGAAAAAAAAGAAGTGCATGCCTCGAAGG
ACTTGAGGTCGAACAAGGTAGAATGCATATACCACACTTATCTGAGACTTTCAAACCAGGGGAATTACTTTTCAATGACAAGCAGTCGAGGGAATGCATCAAAGAGTTCA
AAGCCTCAGTAGCTGTTATCTCTAAAAACACTCATTCATCTTGTCAATTGGTCGAGAAGATGTCAAGCATCACTAAAGTATTACCAAAGGACGCTGGGGACGAAAACTAC
ATCGATGAAATTGTTGATTTCGAAGTTCCAATCTGTAATCTCGAGCAAAATATGGAAGAAGAATGCGATATATCACCCGAGTTACTAAGGATGATTGAGCAAGAAGAAAA
GAAGACTGTGCCATACCAAGAACCTTTGGAAGTTGTTAATCTGGGGACACTAGAAGAGGCGAGAGAA
mRNA sequenceShow/hide mRNA sequence
ATGACCTTGGATCCGCTCAGCAGGGGCAGTCCCCCCCTCACTACATCAAAGGGTGTAAAGTTCAGCGTGGAAGGTGGTCAGGTCATTGTTTATGGGGAGGAAGACATGTT
TGTCACAAAAACGTCAACACTTCCTTATATTGAAGCAGCAGAAGAAGCTTTTGGGTGCTCTTACAGATCATTTGAAGTCGCTAATGCTACTATCTTTCCAACTGAAGGTT
TGGATATTGGTCGTTATATGTCTCGAACATCTCTAGTGGTGGCAACAACGATGATAAGGAGTGGTTATCAAATGCACGGAGGTTTGGGAAAGTGCGATCAAAGAAACCCA
GAGGTGATTTCTCTTCCTAAGGCTAAGGAAAAGTTTGGATTAGGGTATAAGTCAACAACTTCTAAATGGGAGAAGAGAAGAAGAAAAAAAAGAAGTGCATGCCTCGAAGG
ACTTGAGGTCGAACAAGGTAGAATGCATATACCACACTTATCTGAGACTTTCAAACCAGGGGAATTACTTTTCAATGACAAGCAGTCGAGGGAATGCATCAAAGAGTTCA
AAGCCTCAGTAGCTGTTATCTCTAAAAACACTCATTCATCTTGTCAATTGGTCGAGAAGATGTCAAGCATCACTAAAGTATTACCAAAGGACGCTGGGGACGAAAACTAC
ATCGATGAAATTGTTGATTTCGAAGTTCCAATCTGTAATCTCGAGCAAAATATGGAAGAAGAATGCGATATATCACCCGAGTTACTAAGGATGATTGAGCAAGAAGAAAA
GAAGACTGTGCCATACCAAGAACCTTTGGAAGTTGTTAATCTGGGGACACTAGAAGAGGCGAGAGAA
Protein sequenceShow/hide protein sequence
MTLDPLSRGSPPLTTSKGVKFSVEGGQVIVYGEEDMFVTKTSTLPYIEAAEEAFGCSYRSFEVANATIFPTEGLDIGRYMSRTSLVVATTMIRSGYQMHGGLGKCDQRNP
EVISLPKAKEKFGLGYKSTTSKWEKRRRKKRSACLEGLEVEQGRMHIPHLSETFKPGELLFNDKQSRECIKEFKASVAVISKNTHSSCQLVEKMSSITKVLPKDAGDENY
IDEIVDFEVPICNLEQNMEEECDISPELLRMIEQEEKKTVPYQEPLEVVNLGTLEEARE