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Lsi08G003710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal L18p/L5e family protein
Genome locationchr08:10182541..10182921
RNA-Seq ExpressionLsi08G003710
SyntenyLsi08G003710
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646622.1 hypothetical protein Csa_005380 [Cucumis sativus]1.1e-5999.19Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGT
        VLPLFDSVQRSGVAVDGAEKLGT
Subjt:  VLPLFDSVQRSGVAVDGAEKLGT
XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]7.9e-6198.41Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGAI
        VLPLFDSVQRSGVAVDGAEKLGTG+I
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGAI
XP_038884095.1 uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]7.4e-5996.77Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTG
        VLPLFDSVQRSGVAVDGAEKLGTG
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTG
XP_038884096.1 uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida]7.4e-5996.77Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTG
        VLPLFDSVQRSGVAVDGAEKLGTG
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTG
XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]7.4e-5996.77Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTG
        VLPLFDSVQRSGVAVDGAEKLGTG
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTG
TrEMBL top hitse value%identityAlignment
A0A0A0KE39 Uncharacterized protein3.8e-6198.41Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGAI
        VLPLFDSVQRSGVAVDGAEKLGTG+I
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGAI
A0A1S4DVU4 uncharacterized protein LOC1034886726.1e-5995.24Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGAI
        VLPLFDSVQRSG+AVDG EKLG G+I
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGAI
A0A5D3BWW4 Uncharacterized protein6.1e-5995.24Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGAI
        VLPLFDSVQRSG+AVDG EKLG G+I
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGAI
A0A6J1EVG7 uncharacterized protein LOC1114363401.4e-5592.06Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPV YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSGVAV+GAEKLG+GAI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGAI
A0A6J1JZ79 uncharacterized protein LOC1114887454.4e-5792.86Show/hide
Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSGVAV+GAEKLG+GAI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGAI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G43310.1 Ribosomal L18p/L5e family protein1.9e-4169.49Show/hide
Query:  NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLP
        +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK ASRVGEKLG RL+E+GV  V ID  EE+SRP+++RK VLP
Subjt:  NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLP

Query:  LFDSVQRSGVAVDGAEKL
        LFDSV+R+G+ VDG E+L
Subjt:  LFDSVQRSGVAVDGAEKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATAAACCAGAATCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCATCCTCCTC
CGAGCAGGAATTCGTCGCCTATTACCGTTCTAAACTCCACCGCTTTCCTCGATCCAACAACTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTTGGCCACC
GTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTTGCCGAAGAGCTCTCCCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGC
TCCGGCGTCGCCGTCGATGGGGCTGAGAAGCTTGGAACAGGTGCGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCATAAACCAGAATCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCATCCTCCTC
CGAGCAGGAATTCGTCGCCTATTACCGTTCTAAACTCCACCGCTTTCCTCGATCCAACAACTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTTGGCCACC
GTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTTGCCGAAGAGCTCTCCCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGC
TCCGGCGTCGCCGTCGATGGGGCTGAGAAGCTTGGAACAGGTGCGATCTAG
Protein sequenceShow/hide protein sequence
MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQR
SGVAVDGAEKLGTGAI