CuGenDBv2

Gene ID	Lsi08G003730
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	RRM domain-containing protein
Genome location	chr08:10239346..10243236
RNA-Seq Expression	Lsi08G003730
Synteny	Lsi08G003730
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0032991 - protein-containing complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-89

86.43

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKD K+A SVISVIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
        VEMFDDRP+KPGRKISF WL KDDPDFEVAKKMK LTQ+HVAE  FLLK  L EEEKLAKQQQ+ALK NYKKYEIVE V  DGTARRLA+ YNMRV+DD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-89

86.43

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKD K+A SVISVIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
        VEMFDDRP+KPGRKISF WL KDDPDFEVAKKMK LTQ+HVAE  FLLK  L EEEKLAKQQQ+ALK NYKKYEIVE V  DGTARRLA+ YNMRV+DD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

XP_004138411.1 uncharacterized protein LOC101221287 [Cucumis sativus]

4.7e-92

87.94

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQFAMFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKD K+AKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
        VEMFDDRPVKPGRKISF WLE DDPDFEVA+++K L++KHVAE  FL+K H+AEEEKLAKQQQE LKGNYKKYEIV+SV ADGTARRLAK YNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

XP_008441485.1 PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]

5.5e-93

88.44

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQF+MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKD K+AKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
         EMFDDRPVKPGRKISF WLE DDPDFEVA+++K LT+KHVAE  FLLK HLAEEEKLAKQQQE L+GNYKKYEIV+SV ADGTARRLAK YNMRVSDD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

3.0e-99

94.97

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSM DEQFAMFEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVVSVHFIPNYTEPIN+SQCALVEMKDLK+AKSVISVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
        VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMK LT+KHVAE  FLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESV ADGTARRLAK YNMRVSDD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

2.3e-92

87.94

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQFAMFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKD K+AKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
        VEMFDDRPVKPGRKISF WLE DDPDFEVA+++K L++KHVAE  FL+K H+AEEEKLAKQQQE LKGNYKKYEIV+SV ADGTARRLAK YNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

A0A1S3B3J3 uncharacterized protein LOC103485592

2.7e-93

88.44

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQF+MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKD K+AKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
         EMFDDRPVKPGRKISF WLE DDPDFEVA+++K LT+KHVAE  FLLK HLAEEEKLAKQQQE L+GNYKKYEIV+SV ADGTARRLAK YNMRVSDD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

A0A6J1DB90 uncharacterized protein LOC111018537

2.2e-87

82.91

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  +EQFA FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKDLK+AKSVISVIA+FPFM+SGMPRPVRARPAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
        VEMFDDRP+KPG KISF+WL+++DPDF+VAKKMK  T+KH AE  FLLK  L EEEKLAKQQQE LKGNYKK+EIVESV  DGTARRLAKCY+MRV DD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

A0A6J1H6P8 uncharacterized protein LOC111460615

5.2e-89

85.43

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKD K+A SVIS+IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
        VEMFDDRP+KPGRKISF WL KDDPDFEVAKKMK LTQ+HVAE  FLLK  L EEEKLAKQQQ+ALK NYKKYEIVE V  DGTARRLA+ YNMRV+DD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

2.3e-89

85.43

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKD K+A SVISVI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD
        VEMFDDRP+KPGRKISF WL K+DPDFEVAKKMK LTQ+HVAE  FLLK  L EEEKLAKQQQ+ALKGNYKKYEI+E V  DGTARRLA+ YNMRV+DD
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

4.6e-45

46.67

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        M +  +  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMR
          MF D+P KPGR + F W++ +DPDF+ A+++K L +KH AE +F+LK  L E EKL+KQQ E    ++KK+E+++ +  DG A++LA  Y+++
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

3.2e-46

46.67

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Query:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE
        M +  +  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMR
          MF D+P KPGR + F W++ +DPDF+ A+++K L +KH AE +F+LK  L E EKL+KQQ E    ++KK+E+++ +  DG A++LA  Y+++
Subjt:  VEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGATCAATGAACGATGAGCAATTTGCCATGTTTGAGGAGAAGGTAAAACGAACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGC
TTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCTAACTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTTGAAGGATGCAA
AATCTGTCATCTCTGTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTGTAAAG
CCTGGTAGGAAGATTAGCTTTACCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATGAAGCATCTTACTCAGAAACATGTGGCTGAAGTTACATTCTT
GCTGAAGCACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAAAAATATGAGATTGTAGAAAGTGTAACGGCTGATGGAA
CTGCCCGCAGGTTAGCAAAATGTTATAATATGCGAGTTTCAGATGATTAA

mRNA sequence

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CTAATTTGAAATTTTTCCAAGAAAGTTCATCAAAAAAAGAAGGAAAAAGAGAGAGAAACTTGCCCTAATTTATGCGGGTAGGCCTGGAATCGTTCTATTTCCCCATTCTT
CCTCCGTGTACTTCCATTTCCTCGCTGTCAGAGTTCAATCTTTTCTGACATTGGAGAAGGAGATCACCACCTCTCAATTTTTTTCATCAAACTCATCTCCATTTGCCCCA
ATTTCGATTTTTAGTTCTACTGGCTCATGCCCCTCGCTCATCGTCGATTCTTTCGTTTGTCCTCTTCGGACTGATCTCACTCGAGATGGGATCAATGAACGATGAGCAAT
TTGCCATGTTTGAGGAGAAGGTAAAACGAACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTC
AGTGTCCATTTTATTCCTAACTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTTGAAGGATGCAAAATCTGTCATCTCTGTGATAGCTCA
GTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTACCT
GGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATGAAGCATCTTACTCAGAAACATGTGGCTGAAGTTACATTCTTGCTGAAGCACCATTTGGCGGAAGAG
GAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAAAAATATGAGATTGTAGAAAGTGTAACGGCTGATGGAACTGCCCGCAGGTTAGCAAAATGTTA
TAATATGCGAGTTTCAGATGATTAATTGAAAGCTTTGAAGCTTTGCTTTTGTAACTCCTAATGCCCCCTGATTTTTACATGTAAATATGTACAAATTGTCATTGATATGC
CCAATATAGATGAATTACAGACTCCTTTTGTGATTTAGAGGGAGGAAGATAGATAATTTGTATAATACTCCCAACAACACTCTTTTGGATTCCTTTTTTCTTTTTTAAAC
TTTGTATTTCCCCATCATGAAGGGTGATTTATGAAAAATTTGAACACTAGTTTGGTAGTGACTTTGTTCTTGATATTTTATTTTGAAGTATAAGTTTTATGGAGGAAATT
CATTGTGTACTTTAAACTTGGCATAATGTAAAATTTTAGCTCTAACTTTCTA

Protein sequence

Show/hide protein sequence

MGSMNDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKDAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVK
PGRKISFTWLEKDDPDFEVAKKMKHLTQKHVAEVTFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVTADGTARRLAKCYNMRVSDD

Lsi08G003730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome