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Lsi08G003830 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003830
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Genome locationchr08:10551527..10553536
RNA-Seq ExpressionLsi08G003830
SyntenyLsi08G003830
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR001750 - NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJD26430.1 NdhF [Trichosanthes kirilowii]2.9e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

QZL38642.1 NADH dehydrogenase subunit F [Citrullus naudinianus]2.9e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

YP_009751868.1 NADH dehydrogenase subunit F [Indofevillea khasiana]2.9e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

YP_009752289.1 NADH dehydrogenase subunit F [Trichosanthes baviensis]2.9e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

YP_009752892.1 NADH dehydrogenase subunit F [Baijiania yunnanensis]2.9e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

TrEMBL top hitse value%identityAlignment
A0A1S4EU57 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.4e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

A0A249RXU8 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.4e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

A0A249RZL2 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.4e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

A0A286NFU7 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.4e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

A0A6M3RU93 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.4e-4171.13Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

SwissProt top hitse value%identityAlignment
A9LYE7 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic9.3e-4369.01Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLF VIPYIMN I+LI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

Q2L960 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic4.2e-4369.01Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRP AANACQKAFVTNR+GDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLI+LI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

Q2QD43 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.1e-4370.42Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFI IPYIMNLIALI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

Q33113 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)7.1e-4369.01Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRP+AANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMN I+LI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

Q7YJT6 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic3.2e-4369.72Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL                                         GAVAKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLF VIPYIMNLI+LI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

Arabidopsis top hitse value%identityAlignment
ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein2.4e-4166.2Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME
        MCSYLLIGFWFTRP AANACQKAFVTNRVGDFGLLLGIL                                         G +AKSAQFPLHVWLPDAME
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGIL-----------------------------------------GAVAKSAQFPLHVWLPDAME

Query:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI
        GPTPISALIHAATMVAAGIFLVARLLPLFIVIP IM +I+LI
Subjt:  GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALI

ATMG00060.1 NADH dehydrogenase subunit 5C2.7e-2143.66Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGI--------------------------------------------LGAVAKSAQFPLHVWLPD
        + SYLLI FWFTR  A  A  KA + NRVGDFGL LGI                                            +GAV KSAQ   H W PD
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGI--------------------------------------------LGAVAKSAQFPLHVWLPD

Query:  AMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLI
        AMEGPTP+SA IHAATMV AG+F++AR  PLF   P  + +I
Subjt:  AMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLI

ATMG00513.1 NADH dehydrogenase 5A2.7e-2143.66Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGI--------------------------------------------LGAVAKSAQFPLHVWLPD
        + SYLLI FWFTR  A  A  KA + NRVGDFGL LGI                                            +GAV KSAQ   H W PD
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGI--------------------------------------------LGAVAKSAQFPLHVWLPD

Query:  AMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLI
        AMEGPTP+SA IHAATMV AG+F++AR  PLF   P  + +I
Subjt:  AMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLI

ATMG00665.1 NADH dehydrogenase 5B2.7e-2143.66Show/hide
Query:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGI--------------------------------------------LGAVAKSAQFPLHVWLPD
        + SYLLI FWFTR  A  A  KA + NRVGDFGL LGI                                            +GAV KSAQ   H W PD
Subjt:  MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGI--------------------------------------------LGAVAKSAQFPLHVWLPD

Query:  AMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLI
        AMEGPTP+SA IHAATMV AG+F++AR  PLF   P  + +I
Subjt:  AMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACTCGACCTACTGCGGCGAATGCTTGTCAAAAGGCATTTGTAACTAATCGCGTAGGGGATTTTGGTTTATTATTAGG
GATTTTAGGTGCGGTTGCTAAATCGGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTCTTATACATGCTGCTACGATGG
TAGCAGCGGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTATAGTAATACCTTACATCATGAATCTAATAGCTTTGATAGATCCGCGTGCAGGAACCTATCCGAGC
TCATTCCCTTTCAATTTGGTTTACTTGGCTCAATTGGTTGAATCTTACCGGTTCAAGAAATCTAAACTATATTCTAATATACCCCCTCAAATTGTAGACGGTAGAGGATT
CATCAGTTTGTTACAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACTCGACCTACTGCGGCGAATGCTTGTCAAAAGGCATTTGTAACTAATCGCGTAGGGGATTTTGGTTTATTATTAGG
GATTTTAGGTGCGGTTGCTAAATCGGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTCTTATACATGCTGCTACGATGG
TAGCAGCGGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTATAGTAATACCTTACATCATGAATCTAATAGCTTTGATAGATCCGCGTGCAGGAACCTATCCGAGC
TCATTCCCTTTCAATTTGGTTTACTTGGCTCAATTGGTTGAATCTTACCGGTTCAAGAAATCTAAACTATATTCTAATATACCCCCTCAAATTGTAGACGGTAGAGGATT
CATCAGTTTGTTACAACAATGA
Protein sequenceShow/hide protein sequence
MCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALIDPRAGTYPS
SFPFNLVYLAQLVESYRFKKSKLYSNIPPQIVDGRGFISLLQQ