; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G003960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr08:10977569..10979940
RNA-Seq ExpressionLsi08G003960
SyntenyLsi08G003960
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049627.1 putative transmembrane protein [Cucumis melo var. makuwa]1.0e-5377.93Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        MA AMIASQ LLCN SFPVIKP+ L+S LSPFR  R +QP+LSP IS+ T FS  PNR+N SLTR AAR+KPT +DS  FS+EG+SDVRR+LQILLW AE
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS
        AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFF +LPAMNS
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS

XP_004150537.1 uncharacterized protein LOC101210554 [Cucumis sativus]6.9e-5576.16Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        MA AMIASQ LL NHSFPVIKPYTL+S LSPFR  R +QP+LSP IS+TT FS  PNR+N SLTR AARRKPT +DS  FS++GDS+VRR+LQ+LLW AE
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL
        AVYILWLFLLPYAPGDPVWAISSETVNSL+GLSLNFF +LPAMNS  + L+
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL

XP_008445644.1 PREDICTED: uncharacterized protein LOC103488603 [Cucumis melo]1.0e-5377.93Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        MA AMIASQ LLCN SFPVIKP+ L+S LSPFR  R +QP+LSP IS+ T FS  PNR+N SLTR AAR+KPT +DS  FS+EG+SDVRR+LQILLW AE
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS
        AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFF +LPAMNS
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS

XP_038885654.1 uncharacterized protein LOC120075963 isoform X1 [Benincasa hispida]1.1e-6081.46Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        MATAMIASQALLCNHSFPVIKPYTL+SS+SPFR CR +QP+LSPSIS+ T FSP PNR+  SL+R AARRKPTL+DS G SDEGDSDVRR+L+ILLWA E
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL
        AVYILWLF+LPYAPGDPVWAISSETVNSL+GLSLNFFLILPAMNS  + L+
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL

XP_038885655.1 uncharacterized protein LOC120075963 isoform X2 [Benincasa hispida]1.1e-6081.46Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        MATAMIASQALLCNHSFPVIKPYTL+SS+SPFR CR +QP+LSPSIS+ T FSP PNR+  SL+R AARRKPTL+DS G SDEGDSDVRR+L+ILLWA E
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL
        AVYILWLF+LPYAPGDPVWAISSETVNSL+GLSLNFFLILPAMNS  + L+
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL

TrEMBL top hitse value%identityAlignment
A0A0A0KC53 Uncharacterized protein3.4e-5576.16Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        MA AMIASQ LL NHSFPVIKPYTL+S LSPFR  R +QP+LSP IS+TT FS  PNR+N SLTR AARRKPT +DS  FS++GDS+VRR+LQ+LLW AE
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL
        AVYILWLFLLPYAPGDPVWAISSETVNSL+GLSLNFF +LPAMNS  + L+
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL

A0A1S3BD72 uncharacterized protein LOC1034886034.8e-5477.93Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        MA AMIASQ LLCN SFPVIKP+ L+S LSPFR  R +QP+LSP IS+ T FS  PNR+N SLTR AAR+KPT +DS  FS+EG+SDVRR+LQILLW AE
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS
        AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFF +LPAMNS
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS

A0A5D3CZV8 Putative transmembrane protein4.8e-5477.93Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        MA AMIASQ LLCN SFPVIKP+ L+S LSPFR  R +QP+LSP IS+ T FS  PNR+N SLTR AAR+KPT +DS  FS+EG+SDVRR+LQILLW AE
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS
        AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFF +LPAMNS
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS

A0A6J1CDR4 uncharacterized protein LOC1110103168.0e-4973.86Show/hide
Query:  MATAMIASQALLCNHSFPVIKPY--TLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWA
        MA+AMIASQALLCN+SFP IKPY  T SSSLS FR CR       P    TT+F PL +R+N SLT  A RRKPTL DS  FSD+GDSDVRRVLQ LLW 
Subjt:  MATAMIASQALLCNHSFPVIKPY--TLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWA

Query:  AEAVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL
        AEAVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPA+NS  + L+
Subjt:  AEAVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL

A0A6J1I448 uncharacterized protein LOC1114704515.2e-4869.54Show/hide
Query:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE
        M TA+IA+Q LLCN+SF +IKPY   +S   F+ CR +QP+LS S  + T+  PLP R+N+S    AARRKPTL+DS GF+DEG+SDVRRVLQILLWAAE
Subjt:  MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAE

Query:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL
         VY+LWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPA+NS  + L+
Subjt:  AVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25805.1 unknown protein1.2e-2352.83Show/hide
Query:  FSPLPNRQNFSLTRR------AARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAEAVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS
        ++P  +   F L  R       ARRKP         +  D  +RR+++ LLW +EAVYILWLFLLPYAPGDPVWAISSETVNSL+GLSLNFF +LP  N+
Subjt:  FSPLPNRQNFSLTRR------AARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAEAVYILWLFLLPYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNS

Query:  GTLYLL
          ++ L
Subjt:  GTLYLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCCATGATAGCATCTCAAGCTTTACTCTGCAACCACTCTTTTCCAGTGATTAAACCCTATACTCTATCATCTTCCCTCTCTCCTTTCCGATTGTGCAGATC
AGAACAACCAATACTCTCTCCTTCAATCTCCTCTACGACTTCCTTCTCACCCTTACCCAATCGCCAGAATTTTTCTCTCACTCGCCGCGCCGCTCGCCGGAAACCCACAT
TGCTCGATTCTGTCGGTTTCTCCGACGAGGGTGATTCCGATGTCCGACGGGTGCTTCAAATTCTGCTCTGGGCTGCTGAGGCTGTTTACATTTTGTGGCTATTTCTCCTT
CCTTATGCCCCGGGAGATCCTGTATGGGCAATCAGTTCAGAAACTGTGAATTCTCTTGTGGGTCTTTCTCTGAATTTCTTCCTTATATTGCCTGCTATGAACTCTGGTAC
GCTTTATTTGTTGTTTCCTTCACTTTATACCTACTTCTTATTGTTATTACTTCCCTGTCAATCAATTCAAAGAAGTATGTCTCTTGTTTTGTAG
mRNA sequenceShow/hide mRNA sequence
GCCATAACTTTGCCACGCATCGCTGCTCGGAGAGAAAATGGCGACGGCCATGATAGCATCTCAAGCTTTACTCTGCAACCACTCTTTTCCAGTGATTAAACCCTATACTC
TATCATCTTCCCTCTCTCCTTTCCGATTGTGCAGATCAGAACAACCAATACTCTCTCCTTCAATCTCCTCTACGACTTCCTTCTCACCCTTACCCAATCGCCAGAATTTT
TCTCTCACTCGCCGCGCCGCTCGCCGGAAACCCACATTGCTCGATTCTGTCGGTTTCTCCGACGAGGGTGATTCCGATGTCCGACGGGTGCTTCAAATTCTGCTCTGGGC
TGCTGAGGCTGTTTACATTTTGTGGCTATTTCTCCTTCCTTATGCCCCGGGAGATCCTGTATGGGCAATCAGTTCAGAAACTGTGAATTCTCTTGTGGGTCTTTCTCTGA
ATTTCTTCCTTATATTGCCTGCTATGAACTCTGGTACGCTTTATTTGTTGTTTCCTTCACTTTATACCTACTTCTTATTGTTATTACTTCCCTGTCAATCAATTCAAAGA
AGTATGTCTCTTGTTTTGTAGAGTTAATTGTCTTAGTATTTGGAAGTGTCTCTCCCCAAATATTCTTTTACTTTTTTGAGAACTAAAATGAAGAAAAAGAATCCCTCCTC
TAGCATTGGATGGAGCTGTGGTGAGGAGATCAGGCATAGAGTTTCCATGGGGATGCTATGGGTTCATGTGGTATATCTTCAAAGATACCGGGTTCGAACCCGCTTGATAA
TTTGATAACTTAAAATTCTTGTTGTCTCTACTTAATTATACTCCAATCTCAGGCTGGCAAAAACTATTTACACTTGTAGAATATTTGCCTCAATATTGTTCTTTTTTAGT
ACAATAATTGCAAAGATAGAAGATCGAGCCTCTAGCTTTAAGTGAGGGAGTGCATGTCAATTATCATTTAGCTAAACTCACTTTGGACTCAATATAGTTCTTATTTGAGA
ACGCACTTTACAATTTTGATTCGTTCGTGATTTTTGGCGATGAACTTTGTGGCAGGACAGTGGGCATTCGTCTGATTGATGCTCCTGTTCTTCACCCAATGTCTGAGGGA
TTGTTCAATTTTGTCATCGCATGGACGCTCATGTTTGCTCCCCTGCTGTTCACGGATCGAAAGAGGGACCGTTACAGTGGTTCGTTGGACTTATTGTGGGGCTTGCAGAT
GTTCCTTACGAACACCTTTTTGATACCTTATATGGCCATCCGGCTTAATGAGGCTAGCAAAGACTCTGCCCCGCAGCCGCAGTCGAAGCTAGGCTCTTTGATGACCAATG
GAGCTCCTGTCGTTGGCCTGATCGGTGGTGCAGCATGCATCATATCAATAATCTGGTCTTTCGTTGGTCGAGAAGACGGTAACTTTGGAGGTGTAACAGAGAGATGGGAG
TTCTTGATCCAATATCTATCGACAGAGAGGTTAGCTTATGCATTTATTTGGGATATCTGCCTTTACACTGTTTTCCAGCCTTGGTTGATAGGAGAAAACCTTCAAAATGT
TAAGGAGAGCAAGGCTGGACTTATAAGTTCTCTTAGATTTGTCCCTGTTGTTGGCTTAATTGCCTATCTTCTTTTTCTGAAACTTGATGAGGAATTATGATATCAGCTTG
TATGTAAATATACAAAAACTGATGCTAAAGAGCTTACTTGCAAGAACATGAAGTTAATACAAGTGAATATGACAGAAGTGAAGTGGAATACAAGTCAATTTTATTAATTT
TATTGATG
Protein sequenceShow/hide protein sequence
MATAMIASQALLCNHSFPVIKPYTLSSSLSPFRLCRSEQPILSPSISSTTSFSPLPNRQNFSLTRRAARRKPTLLDSVGFSDEGDSDVRRVLQILLWAAEAVYILWLFLL
PYAPGDPVWAISSETVNSLVGLSLNFFLILPAMNSGTLYLLFPSLYTYFLLLLLPCQSIQRSMSLVL