; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G003970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G003970
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRegulator of Vps4 activity in the MVB pathway protein
Genome locationchr08:10984757..10990568
RNA-Seq ExpressionLsi08G003970
SyntenyLsi08G003970
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR005061 - Vacuolar protein sorting-associated protein Ist1
IPR042277 - Vacuolar protein sorting-associated protein IST1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445649.1 PREDICTED: uncharacterized protein LOC103488605 [Cucumis melo]2.5e-5559.73Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        MRRI+ RVVGRSF+S GF+RLVQS+FTRLQSL +HR  RYSED ND + LLQDGL KLALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EA SSVVFAASRWKDF EL DIKS  TSQFGKEF   AVELRNNN VN S++QKLST+KPDM+SKMNLL++IAS+ GI +QLN+QGEP  SIQTRK
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTTSSYQTRSSSRTRR
        R+R+Q+    +TTSSYQTR+SSR  R
Subjt:  RNRQQSRSAASTTSSYQTRSSSRTRR

XP_011656518.1 uncharacterized protein LOC101210797 [Cucumis sativus]2.9e-4853.81Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        MR+I+KRV+GRSF S  F+R VQS+FTRL+SL +HR  R+SED N+ V LLQ+ L +LALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EAVSSV+FAASRWKDF EL D+KS  TSQFGKEF  RAVELRNNN VN S++QKLS +KPD +SKMNLL++IAS+ GI ++LNE+G+ S SIQ RK
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTTSSYQTRSSSR
        R R++++   +TTSSYQTR+SSR
Subjt:  RNRQQSRSAASTTSSYQTRSSSR

XP_022963468.1 uncharacterized protein LOC111463790 [Cucurbita moschata]1.6e-4655.61Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        +RR+ K ++GRS +S  FRRLVQ+A   L++LK  RHGRY ED  DA RLL +GLPKLALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EAVSSVVFAASR +DFPELE+IKS L+S+FG EFA RAVELRNNN+VN S+M KLSTRKP++ESKMNLLRVIASENG TLQLN++GEP S   T  
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTTSSYQTRSSSR
          RQ+ R A+ST  +Y+TRSSSR
Subjt:  RNRQQSRSAASTTSSYQTRSSSR

XP_023538969.1 uncharacterized protein LOC111799739 [Cucurbita pepo subsp. pepo]2.3e-4555.16Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        +RR+ K ++GRS +S  FRRLVQ+A   L++LK  RHGRY ED  DA RLL +GLPKLALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EAVSSVVFAASR +DFPELE+IKS L+S+FG+EFA RAVELR NN+VN S+M KLSTRKP++ESKMNLLRVIASENG TLQLN++GEP S   T  
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTTSSYQTRSSSR
          RQ+ R A ST   Y+TRSSSR
Subjt:  RNRQQSRSAASTTSSYQTRSSSR

XP_038884436.1 uncharacterized protein LOC120075284 isoform X1 [Benincasa hispida]9.7e-6064.16Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        MRRI+  +VGRSFKS  FRRLVQSAFTRL++LKNH H RYSE  +D VRLLQDGL  LALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EAVSSVVFA+SRWKDF ELEDIKS LTSQFGKEF GRAVELRNNNSVNDS+MQKLSTRKP+M+SKMNLL+VIAS+NGITLQLNE+    SSIQTRK
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTTSSYQTRSSSRTRR
        R+RQQ+RS    T+SYQTRSSSR  R
Subjt:  RNRQQSRSAASTTSSYQTRSSSRTRR

TrEMBL top hitse value%identityAlignment
A0A0A0K949 Uncharacterized protein1.4e-4853.81Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        MR+I+KRV+GRSF S  F+R VQS+FTRL+SL +HR  R+SED N+ V LLQ+ L +LALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EAVSSV+FAASRWKDF EL D+KS  TSQFGKEF  RAVELRNNN VN S++QKLS +KPD +SKMNLL++IAS+ GI ++LNE+G+ S SIQ RK
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTTSSYQTRSSSR
        R R++++   +TTSSYQTR+SSR
Subjt:  RNRQQSRSAASTTSSYQTRSSSR

A0A1S3BD77 uncharacterized protein LOC1034886051.2e-5559.73Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        MRRI+ RVVGRSF+S GF+RLVQS+FTRLQSL +HR  RYSED ND + LLQDGL KLALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EA SSVVFAASRWKDF EL DIKS  TSQFGKEF   AVELRNNN VN S++QKLST+KPDM+SKMNLL++IAS+ GI +QLN+QGEP  SIQTRK
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTTSSYQTRSSSRTRR
        R+R+Q+    +TTSSYQTR+SSR  R
Subjt:  RNRQQSRSAASTTSSYQTRSSSRTRR

A0A6J1CEI4 uncharacterized protein LOC1110104906.4e-4150.2Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLL-QDGLPKLALSR-------------------------------------
        MRRI+  ++GR+FKS  FRRL+ SAFTRLQSL  HR  RYS+D +D VRLL QDGL  LALSR                                     
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLL-QDGLPKLALSR-------------------------------------

Query:  -----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTR
             EA S VV+AASR +DFPELE+IKS LTS+FG+EF+GRAVELRNN+ VN+ +MQKLSTRKP+MESKMNLLR IASEN I LQL+ Q +PS   Q +
Subjt:  -----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTR

Query:  -KRNRQQSR----------SAAST--------TSSYQTRSSSRTR
         + N++++R          S++ST        TS Y+TRSS+R R
Subjt:  -KRNRQQSR----------SAAST--------TSSYQTRSSSRTR

A0A6J1HHW4 uncharacterized protein LOC1114637907.8e-4755.61Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        +RR+ K ++GRS +S  FRRLVQ+A   L++LK  RHGRY ED  DA RLL +GLPKLALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EAVSSVVFAASR +DFPELE+IKS L+S+FG EFA RAVELRNNN+VN S+M KLSTRKP++ESKMNLLRVIASENG TLQLN++GEP S   T  
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTTSSYQTRSSSR
          RQ+ R A+ST  +Y+TRSSSR
Subjt:  RNRQQSRSAASTTSSYQTRSSSR

A0A6J1I6P0 uncharacterized protein LOC1114704581.2e-4453.57Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        +RR+ K ++GRS +S  FRRLVQ+A   L++LK   HGRY ED  D  RLL +GLPKLALSR                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  -----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTR
             EAVSSVVFAASR +DFPEL++IKS L+S+FG EFA RAVELRNNN+VN S+M KLSTRKP++ESKM+LLRVIASENG TLQLN++GEP S   T 
Subjt:  -----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTR

Query:  KRNRQQSRSAASTTSSYQTRSSSR
           RQ+ R A ST  +Y+TRSSSR
Subjt:  KRNRQQSRSAASTTSSYQTRSSSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13340.1 Regulator of Vps4 activity in the MVB pathway protein1.6e-2034.27Show/hide
Query:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------
        M + +  ++GRSFK+  F+ L+  A TRL  LKN R  R S+  +D   LL+ G  + A  R                                      
Subjt:  MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR--------------------------------------

Query:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK
            EAVS ++FAASR  +FPEL++I++ L S+FGK+ A R++ELR+N  V+  ++QKLSTR P  E +M  L+ IA+EN I L+L++     +S  T  
Subjt:  ----EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRK

Query:  RNRQQSRSAASTT
            Q  S  S T
Subjt:  RNRQQSRSAASTT

AT1G34220.2 Regulator of Vps4 activity in the MVB pathway protein3.1e-1144.16Show/hide
Query:  REAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASEN
        +EA+SSV FAA R  D  EL+ ++    S++GKEF   A EL+ ++ VN  L++ LS R P  E+K+ LL+ IA E+
Subjt:  REAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASEN

AT2G19710.1 Regulator of Vps4 activity in the MVB pathway protein5.2e-1126.76Show/hide
Query:  VKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR------------------------------------------
        +K+V+ R FK    +  +Q A +RL+ LKN +  +  +   +  +LL+ G    A  R                                          
Subjt:  VKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR------------------------------------------

Query:  EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNE--QGEPSSSIQTRKRN
        EAV+SV+FA+ R  D PEL +I    T+++GK+F+  AVELR ++ V+  L++KLS + PD  +K+ +L  IA E+ +  +     + +P  +      N
Subjt:  EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNE--QGEPSSSIQTRKRN

Query:  RQQSRSAASTTSS
          Q  S+ +  SS
Subjt:  RQQSRSAASTTSS

AT4G29440.1 Regulator of Vps4 activity in the MVB pathway protein1.9e-0824.77Show/hide
Query:  VKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR------------------------------------------
        +K+V+ RSFK    +  +Q A +RL+ LKN +  +  +   +   LL+ G  + A  R                                          
Subjt:  VKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSR------------------------------------------

Query:  EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRKRNRQ
        EAV+SV++A+ R  D  EL DI    ++++GK+F   A+ L+ ++ V+  L++KLS + PD  +K+ +L  IA+++ +T       E  S +++  +   
Subjt:  EAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRKRNRQ

Query:  QSRSAASTTSSYQTRSSSRTRR
         +  A+S+ S   T   S + R
Subjt:  QSRSAASTTSSYQTRSSSRTRR

AT4G35730.1 Regulator of Vps4 activity in the MVB pathway protein5.8e-1038.16Show/hide
Query:  REAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASE
        +E ++S++FAA R  + PEL D++     ++GK+F   A +LR +  VN  L+ KLS R P  E K+ +++ IA E
Subjt:  REAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVNDSLMQKLSTRKPDMESKMNLLRVIASE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGAATTGTGAAACGTGTTGTGGGAAGAAGTTTCAAGTCCTGTGGTTTCAGACGTCTGGTCCAATCTGCTTTCACGCGCCTCCAATCGCTGAAGAACCATCGCCA
TGGAAGATATTCCGAAGATGGAAACGACGCCGTTCGCCTCCTTCAAGATGGCCTTCCCAAACTTGCTCTCTCTCGCGAGGCAGTGTCAAGTGTAGTATTTGCAGCTTCAA
GATGGAAGGATTTTCCCGAACTTGAAGACATTAAATCAACATTAACTTCTCAATTTGGCAAAGAGTTTGCTGGTCGTGCCGTTGAATTACGCAACAACAATAGCGTAAAT
GACTCGTTAATGCAAAAACTTTCTACACGGAAGCCAGATATGGAGAGTAAAATGAATCTTCTTAGAGTCATTGCTTCTGAAAATGGCATTACTTTGCAACTCAATGAACA
GGGTGAGCCATCCAGTTCGATTCAAACTAGAAAACGAAACAGACAACAAAGCAGAAGTGCGGCTTCGACCACAAGCTCATATCAAACTCGCAGCTCAAGTCGCACAAGAC
GTTGA
mRNA sequenceShow/hide mRNA sequence
GTGTGTTCAGATTAGATCAGAATTCAGATAATCTTGTTGTTGTTGAGCTTATAATTATAATTTTCTCCTTCTAATTTCTCTCTTGAGCTATCCGGAGAAAAAGAAAAGAA
AAAAAAAAGAAAAGAATGAGAAGAATTGTGAAACGTGTTGTGGGAAGAAGTTTCAAGTCCTGTGGTTTCAGACGTCTGGTCCAATCTGCTTTCACGCGCCTCCAATCGCT
GAAGAACCATCGCCATGGAAGATATTCCGAAGATGGAAACGACGCCGTTCGCCTCCTTCAAGATGGCCTTCCCAAACTTGCTCTCTCTCGCGAGGCAGTGTCAAGTGTAG
TATTTGCAGCTTCAAGATGGAAGGATTTTCCCGAACTTGAAGACATTAAATCAACATTAACTTCTCAATTTGGCAAAGAGTTTGCTGGTCGTGCCGTTGAATTACGCAAC
AACAATAGCGTAAATGACTCGTTAATGCAAAAACTTTCTACACGGAAGCCAGATATGGAGAGTAAAATGAATCTTCTTAGAGTCATTGCTTCTGAAAATGGCATTACTTT
GCAACTCAATGAACAGGGTGAGCCATCCAGTTCGATTCAAACTAGAAAACGAAACAGACAACAAAGCAGAAGTGCGGCTTCGACCACAAGCTCATATCAAACTCGCAGCT
CAAGTCGCACAAGACGTTGATACATTTATGGGTTTTACTATATTTTTGTAATATTAATAGTTTATCCATTTTTAAATTTTATCGTTCTATAGATTTTTTAAAGATGTTCA
ATTCAATACTCGTGTGTTATTTGAATGTTTTAAGTTTTAACGTTTTAGAATTAAGGAAATAAATATCGA
Protein sequenceShow/hide protein sequence
MRRIVKRVVGRSFKSCGFRRLVQSAFTRLQSLKNHRHGRYSEDGNDAVRLLQDGLPKLALSREAVSSVVFAASRWKDFPELEDIKSTLTSQFGKEFAGRAVELRNNNSVN
DSLMQKLSTRKPDMESKMNLLRVIASENGITLQLNEQGEPSSSIQTRKRNRQQSRSAASTTSSYQTRSSSRTRR