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Lsi08G004050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G004050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionconserved peptide upstream open reading frame 53
Genome locationchr08:11346552..11347342
RNA-Seq ExpressionLsi08G004050
SyntenyLsi08G004050
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2053274.1 hypothetical protein ES319_A12G176500v1 [Gossypium barbadense]7.5e-1759.14Show/hide
Query:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRLRPK++CSGV+CFG FHIK+  F L LF RG  T
Subjt:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
KAG2664121.1 hypothetical protein I3760_16G064500 [Carya illinoinensis]2.1e-1969.32Show/hide
Query:  MSAGFDLAVIGALLQL------CFSSL--LLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSAGFDL +IGALL+L       FS+L  +  CCM+LC F+Q LNLV+ SVSMRLRPKRTCSGVKCFGAFHIKRF F L LF RGG T
Subjt:  MSAGFDLAVIGALLQL------CFSSL--LLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
KAG6579195.1 hypothetical protein SDJN03_23643, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2989.41Show/hide
Query:  MSAGFDLAVIGALLQLCF----SSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRF-SFLLLLFRRGGFT
        MSAGFDLAVIGALLQLCF    SSLLLSCCMILC FKQSLNLVF SVSMR RPKRTCSGVKCFGAFHIKRF SF+LLLFRRGGFT
Subjt:  MSAGFDLAVIGALLQLCF----SSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRF-SFLLLLFRRGGFT
KAG6672509.1 hypothetical protein I3842_16G060900 [Carya illinoinensis]2.1e-1969.32Show/hide
Query:  MSAGFDLAVIGALLQL------CFSSL--LLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSAGFDL +IGALL+L       FS+L  +  CCM+LC F+Q LNLV+ SVSMRLRPKRTCSGVKCFGAFHIKRF F L LF RGG T
Subjt:  MSAGFDLAVIGALLQL------CFSSL--LLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
KGN45959.1 hypothetical protein Csa_005610 [Cucumis sativus]7.3e-2891.25Show/hide
Query:  MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSAGFDLAVIGALLQLCFSSLLL    IL SFKQSLNL+FSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFR+GGFT
Subjt:  MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
TrEMBL top hitse value%identityAlignment
A0A0A0KAV1 Uncharacterized protein3.5e-2891.25Show/hide
Query:  MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSAGFDLAVIGALLQLCFSSLLL    IL SFKQSLNL+FSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFR+GGFT
Subjt:  MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
A0A5D2EBR0 Uncharacterized protein3.7e-1759.14Show/hide
Query:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRLRPK++CSGV+CFG FHIK+  F L LF RG  T
Subjt:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
A0A5D2MYL6 Uncharacterized protein3.7e-1759.14Show/hide
Query:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRLRPK++CSGV+CFG FHIK+  F L LF RG  T
Subjt:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
A0A5D2WVW8 Uncharacterized protein3.7e-1759.14Show/hide
Query:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRLRPK++CSGV+CFG FHIK+  F L LF RG  T
Subjt:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
A0A5J5TET6 Uncharacterized protein3.7e-1759.14Show/hide
Query:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
        MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRLRPK++CSGV+CFG FHIK+  F L LF RG  T
Subjt:  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68552.1 conserved peptide upstream open reading frame 538.9e-0846.51Show/hide
Query:  MSAGFDLAVIGALLQLC---------FSSLLLSC---CMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIK--RFSFLLL
        MSAGF+  VI +L+ +           SS L SC    +  C  KQ L L   S+SMRLRPKRTCS V+ FG FHIK  +FSF ++
Subjt:  MSAGFDLAVIGALLQLC---------FSSLLLSC---CMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIK--RFSFLLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCCTCTTTGCTTCTTTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAA
TCTGGTGTTTTCATCTGTTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCT
TCAGAAGAGGGGGTTTCACCTGA
mRNA sequenceShow/hide mRNA sequence
AAATTTTGTTATTTTTATATACCCACTTCTCCTCTTCTCCTTCCTGGAGATTTGTGTTTAGGCAAAAAAATTCAGTGTGTTAGAGAGTTTTCTTCTGTCTCTATCTTTGG
CTCTGCAACTTGAGCGTTTCTCTGAGGTCCATTTTCACTGTGTTTCTGCAGACGCCATAGGCATAGATAATAAGTTTAACTCTTCCTTTGTCACGTTTTAAGCAAAGGCC
AACTATAGCCATTGATTTGTAATCCTATCCCTTTTTTCTTCTTTCTTTCTCTATTCTCTTTGCTTTATTTATTATCTTCGTTTTGCTTATTCTTGTTCTGTTTGAAGGGG
CAGAGAGAGGGAGGGGAGGGGTTTCTTTTTCTTTTTTGTTTATTGGATTCTCTTTGTGTTTTGAGGAAGAGGAAAGCAGAGTTCTAGGGAGTGTTGAGGAGGTGGAGATT
TATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCCTCTTTGCTTCTTTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCA
ATCTGGTGTTTTCATCTGTTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTC
TTCAGAAGAGGGGGTTTCACCTGA
Protein sequenceShow/hide protein sequence
MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT