CuGenDBv2

Gene ID	Lsi08G004110
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	selenoprotein K
Genome location	chr08:11510485..11512781
RNA-Seq Expression	Lsi08G004110
Synteny	Lsi08G004110
Gene Ontology terms	GO:0006816 - calcium ion transport (biological process) GO:0032469 - endoplasmic reticulum calcium ion homeostasis (biological process) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0005794 - Golgi apparatus (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR024491 - Selenoprotein SelK/SelG

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8646613.1 hypothetical protein Csa_005613 [Cucumis sativus]

7.2e-46

98.94

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAI+NVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

XP_004140863.1 selenoprotein K isoform X1 [Cucumis sativus]

7.2e-46

98.94

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAI+NVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

XP_008445670.1 PREDICTED: selenoprotein K [Cucumis melo]

7.2e-46

98.94

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAIIN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

XP_022964558.1 selenoprotein K-like [Cucurbita moschata]

9.4e-46

97.87

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAI+N+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

XP_031743925.1 selenoprotein K isoform X2 [Cucumis sativus]

2.5e-46

95.88

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Query:  MESVVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        ++ VVKSQRSFWRLKTITDFFWAI+NVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  MESVVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDW6 Uncharacterized protein

3.5e-46

98.94

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAI+NVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

A0A1S3BE45 selenoprotein K

3.5e-46

98.94

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAIIN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

A0A6J1HI52 selenoprotein K-like

4.5e-46

97.87

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAI+N+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

A0A6J1JQF6 selenoprotein K

4.5e-46

97.87

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAI+N+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

A0A6J1JVZ4 selenoprotein K-like

2.3e-45

96.81

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
        VVKSQRSFWRLKTITDFFWAI+N+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPR LDNVRGIDHSSLPACGSCCG
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G08230.1 glycine-rich protein

1.8e-26

63.21

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Query:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVRGI------DHSSLPA
        VVK++R  WRL+TI DFF +IIN+I VFF T+FSMEKS+AYRKGS   KKW      GGG GG   G  GGR  GPPR GLDNVRG+      DH+SLPA
Subjt:  VVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVRGI------DHSSLPA

Query:  CGSCCG
        CGSCCG
Subjt:  CGSCCG

AT4G08230.2 glycine-rich protein

2.2e-13

62.5

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Query:  MEKSEAYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVRGI------DHSSLPACGSCCG
        MEKS+AYRKGS   KKW      GGG GG   G  GGR  GPPR GLDNVRG+      DH+SLPACGSCCG
Subjt:  MEKSEAYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVRGI------DHSSLPACGSCCG

Sequences

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CDS sequence

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mRNA sequence

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ATGGAAAGTGTAGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACTATAACTGATTTCTTTTGGGCCATCATAAACGTTATCGGTGTGTTTTTTACCACCTTGTTCTC
GATGGAAAAATCAGAGGCATATAGAAAAGGATCCGGTTCTGGGAAGAAATGGGACGGTGGTGGCCCTGGAGGACCTGGGTCGGGGCCCTATGGTGGCCGTCCCCGTGGTC
CACCTCGTGGTCTAGACAATGTTCGAGGGATCGATCACAGTTCATTACCTGCCTGTGGCTCGTGCTGTGGCTAAGTTTTGGCTGCTTCCATGGTGCGTCTACATAAAGCT
GTCTCTCTAGACAATGTTTATTTCAATTTAAAATTGTGTGGACGTGCTGTAAATGTGGATGGAATGTTAACTGCGAATATATATTAGTATATTATATGCCAAAGAGAAAC
GTAAATCCTTTATCCTTCATAGATCAACAAGGTTCTCTCATCATCTCATCTTTCGGGTTCGGGCATACAAACGTAGTTTATAATGTAATGTGGTTAACTATTATTGGTGT
TGTTATTATTATTATTATTATTATCATCATTTTATCAAAAGCGTTTGGCATTTTAAAA

Protein sequence

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MESVVKSQRSFWRLKTITDFFWAIINVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

Lsi08G004110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome