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Lsi08G004190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G004190
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrotransposon protein
Genome locationchr08:11690825..11692648
RNA-Seq ExpressionLsi08G004190
SyntenyLsi08G004190
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-0935.25Show/hide
Query:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W   K ++     + LYV+LQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPTQWKHDYCMEVL
         +L  F+D+P +WK+  CM +L
Subjt:  MLLSHFMDFPTQWKHDYCMEVL

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-0833.61Show/hide
Query:  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +  P++ RR  S  G+  +  R   +  ++ IG I  W   K ++     + LY ELQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPTQWKHDYCMEVL
         +L  F+D+P +WK+  CM +L
Subjt:  MLLSHFMDFPTQWKHDYCMEVL

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]2.0e-0535.14Show/hide
Query:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W   K ++     + LY ELQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPT
         +L  F+D+PT
Subjt:  MLLSHFMDFPT

TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein1.4e-0935.25Show/hide
Query:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W   K ++     + LYV+LQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPTQWKHDYCMEVL
         +L  F+D+P +WK+  CM +L
Subjt:  MLLSHFMDFPTQWKHDYCMEVL

A0A5A7VG45 Retrotransposon protein1.2e-0833.61Show/hide
Query:  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +  P++ RR  S  G+  +  R   +  ++ IG I  W   K ++     + LY ELQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPTQWKHDYCMEVL
         +L  F+D+P +WK+  CM +L
Subjt:  MLLSHFMDFPTQWKHDYCMEVL

A0A5D3C7T4 Uncharacterized protein9.5e-0635.14Show/hide
Query:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W   K ++     + LY ELQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPT
         +L  F+D+PT
Subjt:  MLLSHFMDFPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGAGGATATCATTTTCGATAGTCCTGTCATCCCAATAGCTGCCCCTATTAAAATCATAAGTCAATGGACTATTTCTGAGGAGCCAAGAGGAATTAGGGGTTGTTT
GGGGAATGAGATTGTAATGGGTTGGGTTTTGAAGCCCATGTTTGGACAACCTGTTTTGGGCCTGCCTTCTTCTCCTTTCTCTGAAACTCTAATCAATGATCATTTTCTCA
CCATCAATGCTCCTTCAACCCTCCGCCTTCTGCCTACCCCAGGAAGTAGAAGGCATAGCACTAGCATGCCAACAAGGAATAGAAGGTCTCAGTCATCAATTGGAGAATAT
AACGAGGTGGTACGAGAGGGCTTTCAGCTATTAACTCAGTTTATTGGTGGGATTACACAATGGCTTATCGTGAAGGATGACCTGACAAGGCATCATCGTAGAGAATTGTA
CGTCGAGCTGCAGTCAATCACTAGACTGTCGATGCAAGATGGCTTAACTGTTGCACAATCTTTGCTTGCAGATCCTATGCTATTGAGCCACTTCATGGACTTCCCAACAC
AATGGAAGCATGATTATTGCATGGAAGTCCTTAGGCTACATCGGAATGAAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGAGGATATCATTTTCGATAGTCCTGTCATCCCAATAGCTGCCCCTATTAAAATCATAAGTCAATGGACTATTTCTGAGGAGCCAAGAGGAATTAGGGGTTGTTT
GGGGAATGAGATTGTAATGGGTTGGGTTTTGAAGCCCATGTTTGGACAACCTGTTTTGGGCCTGCCTTCTTCTCCTTTCTCTGAAACTCTAATCAATGATCATTTTCTCA
CCATCAATGCTCCTTCAACCCTCCGCCTTCTGCCTACCCCAGGAAGTAGAAGGCATAGCACTAGCATGCCAACAAGGAATAGAAGGTCTCAGTCATCAATTGGAGAATAT
AACGAGGTGGTACGAGAGGGCTTTCAGCTATTAACTCAGTTTATTGGTGGGATTACACAATGGCTTATCGTGAAGGATGACCTGACAAGGCATCATCGTAGAGAATTGTA
CGTCGAGCTGCAGTCAATCACTAGACTGTCGATGCAAGATGGCTTAACTGTTGCACAATCTTTGCTTGCAGATCCTATGCTATTGAGCCACTTCATGGACTTCCCAACAC
AATGGAAGCATGATTATTGCATGGAAGTCCTTAGGCTACATCGGAATGAAACATGA
Protein sequenceShow/hide protein sequence
MSEDIIFDSPVIPIAAPIKIISQWTISEEPRGIRGCLGNEIVMGWVLKPMFGQPVLGLPSSPFSETLINDHFLTINAPSTLRLLPTPGSRRHSTSMPTRNRRSQSSIGEY
NEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADPMLLSHFMDFPTQWKHDYCMEVLRLHRNET