; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G004260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G004260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglutamic acid-rich protein-like isoform X2
Genome locationchr08:11779607..11787497
RNA-Seq ExpressionLsi08G004260
SyntenyLsi08G004260
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016874 - ligase activity (molecular function)
InterPro domainsIPR037647 - HIRA-interacting protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145363.1 DNA ligase 1 isoform X1 [Cucumis sativus]7.1e-7282.51Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQ ND P EE +DVAV IETKIHNAMRS  SH KEQADSLTFEGVRRLLEKDLCME YTLDVHKRYVKQCL KC+E  L+DNVSKDSE TGRK+VN
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        KEEA ESPEGHQSKK  KEPCLEDEE MEDSP MGL+ GR+TKNVESDGIKGIK KDDKD+PSES I KAI +R SYLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

XP_011649194.1 DNA ligase 1 isoform X2 [Cucumis sativus]7.1e-7282.51Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQ ND P EE +DVAV IETKIHNAMRS  SH KEQADSLTFEGVRRLLEKDLCME YTLDVHKRYVKQCL KC+E  L+DNVSKDSE TGRK+VN
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        KEEA ESPEGHQSKK  KEPCLEDEE MEDSP MGL+ GR+TKNVESDGIKGIK KDDKD+PSES I KAI +R SYLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

XP_022939456.1 DNA ligase 1-like isoform X1 [Cucurbita moschata]2.2e-6577.6Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQDNDAPNEEA+DV V IETKI NAM S  SH KEQADSLTFEGVRRLLEKDLCME Y LDVHKRY+KQCL KC+E   +DN SK SEETG K+V+
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        + EAAES EGHQSKK  KEPCLEDEE MEDSP MGL+ G  TKNVESD IKGIKDKDDKDIP+ES I KAI +R  YLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

XP_038884709.1 glutamic acid-rich protein isoform X1 [Benincasa hispida]3.3e-6981.97Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQD DA N++A+DVAVDIETKI+NAMRS  S+ KE+ADSLTFEGVRRLLEKDLCMEMYTLDVHKR VKQCL KC E   +DNVSK SEETGRK+VN
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMG-LIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        KEEAAE  EGHQSKK VKEPC EDEE MEDSP MG LI RNTKNVESDGIKGIKDKDDKDIPSES I KAI +R SYLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMG-LIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

XP_038884710.1 glutamic acid-rich protein isoform X2 [Benincasa hispida]3.3e-6981.97Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQD DA N++A+DVAVDIETKI+NAMRS  S+ KE+ADSLTFEGVRRLLEKDLCMEMYTLDVHKR VKQCL KC E   +DNVSK SEETGRK+VN
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMG-LIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        KEEAAE  EGHQSKK VKEPC EDEE MEDSP MG LI RNTKNVESDGIKGIKDKDDKDIPSES I KAI +R SYLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMG-LIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

TrEMBL top hitse value%identityAlignment
A0A0A0LIS6 CHZ domain-containing protein3.4e-7282.51Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQ ND P EE +DVAV IETKIHNAMRS  SH KEQADSLTFEGVRRLLEKDLCME YTLDVHKRYVKQCL KC+E  L+DNVSKDSE TGRK+VN
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        KEEA ESPEGHQSKK  KEPCLEDEE MEDSP MGL+ GR+TKNVESDGIKGIK KDDKD+PSES I KAI +R SYLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

A0A6J1FFY5 DNA ligase 1-like isoform X11.1e-6577.6Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQDNDAPNEEA+DV V IETKI NAM S  SH KEQADSLTFEGVRRLLEKDLCME Y LDVHKRY+KQCL KC+E   +DN SK SEETG K+V+
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        + EAAES EGHQSKK  KEPCLEDEE MEDSP MGL+ G  TKNVESD IKGIKDKDDKDIP+ES I KAI +R  YLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

A0A6J1FGV2 glutamic acid-rich protein-like isoform X21.1e-6577.6Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQDNDAPNEEA+DV V IETKI NAM S  SH KEQADSLTFEGVRRLLEKDLCME Y LDVHKRY+KQCL KC+E   +DN SK SEETG K+V+
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        + EAAES EGHQSKK  KEPCLEDEE MEDSP MGL+ G  TKNVESD IKGIKDKDDKDIP+ES I KAI +R  YLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

A0A6J1JTY1 glutamic acid-rich protein-like isoform X17.7e-6475.41Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQD DAPNEEA+DV V IETKI NAM S  SH KEQADSLTFEGVRRLLE DLCME Y LDVHKRY+KQCL KC+E   +DN SK SEETG K+V+
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        + EAAES EGHQSKK  KEPCLEDEE MEDSP MGL+ G  TKN ESD +KGIKDKDDKDIP+ES I KAI +R  YLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

A0A6J1K3E3 glutamic acid-rich protein-like isoform X27.7e-6475.41Show/hide
Query:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN
        MAEELQD DAPNEEA+DV V IETKI NAM S  SH KEQADSLTFEGVRRLLE DLCME Y LDVHKRY+KQCL KC+E   +DN SK SEETG K+V+
Subjt:  MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVN

Query:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        + EAAES EGHQSKK  KEPCLEDEE MEDSP MGL+ G  TKN ESD +KGIKDKDDKDIP+ES I KAI +R  YLKANSE
Subjt:  KEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLI-GRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G44780.1 CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098)1.1e-1434.43Show/hide
Query:  AEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKN--V
        AE   ++   N + VD A +IE KI  A+RS  ++++ +AD  T   VRR+LE+D+ +E   LDV+K +VK+ L KC+E A  ++ S++S+ET R++  +
Subjt:  AEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKN--V

Query:  NKEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
          +E AE  E H              E M D+ +     R  K+V+  G K    +D         I +A+ +R SY+KANSE
Subjt:  NKEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

AT1G44780.2 INVOLVED IN: biological_process unknown1.1e-1434.43Show/hide
Query:  AEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKN--V
        AE   ++   N + VD A +IE KI  A+RS  ++++ +AD  T   VRR+LE+D+ +E   LDV+K +VK+ L KC+E A  ++ S++S+ET R++  +
Subjt:  AEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKN--V

Query:  NKEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
          +E AE  E H              E M D+ +     R  K+V+  G K    +D         I +A+ +R SY+KANSE
Subjt:  NKEEAAESPEGHQSKKVVKEPCLEDEENMEDSPDMGLIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE

AT4G08310.1 FUNCTIONS IN: molecular_function unknown5.9e-2443.9Show/hide
Query:  DIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKN--VNKEEAAESPEGHQSKKVVK
        DIE++I  AM+S  ++++++AD+ TFEGVRRLLE+DL +E + LDVHK +VKQ L +C+  A  D  S++S ET +K+     +EAAE  + H +KK  K
Subjt:  DIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKN--VNKEEAAESPEGHQSKKVVK

Query:  EPCLEDEENMEDSPDMGLIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE
        E    D+E  +DSP MGL+    +N      +  KD+D + + S+  I KA+ +R SY+KANSE
Subjt:  EPCLEDEENMEDSPDMGLIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGGAATTACAGGACAACGATGCTCCAAACGAAGAAGCCGTGGATGTTGCTGTTGATATAGAGACGAAGATTCATAACGCTATGCGCTCTTGCTTCTCTCACAT
CAAGGAACAAGCCGACTCTTTAACTTTTGAGGGGGTTAGAAGATTGTTAGAGAAGGACTTGTGTATGGAGATGTATACTTTAGATGTGCACAAAAGATATGTCAAGCAGT
GTTTGGAGAAGTGCATAGAAACTGCTTTGAAAGACAATGTATCCAAGGATTCTGAGGAGACTGGGAGAAAAAATGTAAATAAAGAAGAAGCAGCTGAGTCACCTGAAGGG
CATCAGTCCAAGAAAGTTGTAAAGGAACCTTGCTTGGAAGATGAGGAAAACATGGAAGACTCTCCAGATATGGGCCTCATAGGACGTAACACAAAAAATGTTGAATCTGA
TGGAATCAAAGGAATCAAAGACAAAGATGACAAAGATATTCCTAGTGAGAGTAGAATAACAAAAGCTATTATAGAAAGAATTTCTTATCTTAAAGCTAATTCGGAGATGG
GTATCAGAAATGTTAATCAAGTACTCATAACTGAGGCTGTGGAAGCTGTGCAGCCTATTGAAGATGATGCAGCCGTAGGGCCTTTCCAACAAAGGGAAGGTAAGGCATAT
GTACAAGAAGAGGAATTTGATGACCTCTTCGATTATGAGAGATCAAACCATCGAACGTCTTGTGTAGGACAGAATCGTTCAAATAATGGGCCTTCAAGTCCGCCGAGGTG
TCGAACTTACGACGATTGT
mRNA sequenceShow/hide mRNA sequence
TTTTTCCAGTCAAGCAGAGTCATTCTTGGAAAGTCCCAACACACCTTCAGTCCAGAGCCCCATAATTCCTTCCTTCGCACAAAAATCGGTGCGAGTCGAAGAACAGCACA
ATGGCGGAGGAATTACAGGACAACGATGCTCCAAACGAAGAAGCCGTGGATGTTGCTGTTGATATAGAGACGAAGATTCATAACGCTATGCGCTCTTGCTTCTCTCACAT
CAAGGAACAAGCCGACTCTTTAACTTTTGAGGGGGTTAGAAGATTGTTAGAGAAGGACTTGTGTATGGAGATGTATACTTTAGATGTGCACAAAAGATATGTCAAGCAGT
GTTTGGAGAAGTGCATAGAAACTGCTTTGAAAGACAATGTATCCAAGGATTCTGAGGAGACTGGGAGAAAAAATGTAAATAAAGAAGAAGCAGCTGAGTCACCTGAAGGG
CATCAGTCCAAGAAAGTTGTAAAGGAACCTTGCTTGGAAGATGAGGAAAACATGGAAGACTCTCCAGATATGGGCCTCATAGGACGTAACACAAAAAATGTTGAATCTGA
TGGAATCAAAGGAATCAAAGACAAAGATGACAAAGATATTCCTAGTGAGAGTAGAATAACAAAAGCTATTATAGAAAGAATTTCTTATCTTAAAGCTAATTCGGAGATGG
GTATCAGAAATGTTAATCAAGTACTCATAACTGAGGCTGTGGAAGCTGTGCAGCCTATTGAAGATGATGCAGCCGTAGGGCCTTTCCAACAAAGGGAAGGTAAGGCATAT
GTACAAGAAGAGGAATTTGATGACCTCTTCGATTATGAGAGATCAAACCATCGAACGTCTTGTGTAGGACAGAATCGTTCAAATAATGGGCCTTCAAGTCCGCCGAGGTG
TCGAACTTACGACGATTGT
Protein sequenceShow/hide protein sequence
MAEELQDNDAPNEEAVDVAVDIETKIHNAMRSCFSHIKEQADSLTFEGVRRLLEKDLCMEMYTLDVHKRYVKQCLEKCIETALKDNVSKDSEETGRKNVNKEEAAESPEG
HQSKKVVKEPCLEDEENMEDSPDMGLIGRNTKNVESDGIKGIKDKDDKDIPSESRITKAIIERISYLKANSEMGIRNVNQVLITEAVEAVQPIEDDAAVGPFQQREGKAY
VQEEEFDDLFDYERSNHRTSCVGQNRSNNGPSSPPRCRTYDDC