; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G004280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G004280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA polymerase II transcription factor B subunit 4
Genome locationchr08:11792607..11797227
RNA-Seq ExpressionLsi08G004280
SyntenyLsi08G004280
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0005675 - transcription factor TFIIH holo complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004600 - TFIIH subunit Tfb4/GTF2H3
IPR036465 - von Willebrand factor A-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578972.1 LysM domain-containing GPI-anchored protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.7e-13285.42Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        +IGDEQSIKEDP+GGTMSSLLSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQRSMVPIDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS                                SVFGETPV VDSVSK KRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

XP_004152842.1 general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus]2.4e-13687.46Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYLSTVF TDLHSRTFLQLPKSVGVDFRAS                                SVFGETPVE+DSVSK KRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

XP_008441918.2 PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 [Cucumis melo]4.5e-13586.78Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYL+TVF TDLHSRTFLQLPKSVGVDFRAS                                SVFGETPVE+DS+SK KRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

XP_022141943.1 RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charantia]1.6e-13285.08Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MAS PSKLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL LNQLNEVVVIGTGYASCKYLYNSSS+SN GLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        VI DEQS+KEDP+GGTMSSLLSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYLSTVFATDLHSR FLQLPKSVGVDFRAS                                SVFGETPV+VDSVSKQKRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

XP_038886688.1 general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida]7.7e-13586.1Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MASAP KLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        VI DEQS+KEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYLSTVF TDLHSRTFLQLPKSVGVDFRAS                                SVFGE+P+E+DSVSKQKRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

TrEMBL top hitse value%identityAlignment
A0A0A0LMM2 Uncharacterized protein1.2e-13687.46Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYLSTVF TDLHSRTFLQLPKSVGVDFRAS                                SVFGETPVE+DSVSK KRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

A0A1S3B4H7 LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 42.2e-13586.78Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYL+TVF TDLHSRTFLQLPKSVGVDFRAS                                SVFGETPVE+DS+SK KRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

A0A6J1CM09 RNA polymerase II transcription factor B subunit 4 isoform X17.8e-13385.08Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MAS PSKLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL LNQLNEVVVIGTGYASCKYLYNSSS+SN GLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        VI DEQS+KEDP+GGTMSSLLSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYLSTVFATDLHSR FLQLPKSVGVDFRAS                                SVFGETPV+VDSVSKQKRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

A0A6J1FJQ6 RNA polymerase II transcription factor B subunit 49.5e-13184.8Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        +IGDEQSI+EDP+GGTMSSLLSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQRSMVPIDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDS-VSKQKRKTPE
        YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS                                SVFGETPV VDS VSK KRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDS-VSKQKRKTPE

A0A6J1JZK7 RNA polymerase II transcription factor B subunit 41.9e-13184.75Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEF

Query:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV
        +IGDEQSIKEDP+ GTMSSLLSGSLSMALCY+QKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQRSMVPIDSCYIGSHNSAFLQQASYIT GV
Subjt:  VIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGV

Query:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE
        YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS                                SVFGETPV VDSVSK KRKTPE
Subjt:  YLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS--------------------------------SVFGETPVEVDSVSKQKRKTPE

SwissProt top hitse value%identityAlignment
Q05B56 General transcription factor IIH subunit 32.7e-2933.71Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY----------------NSSSYSNHGLEDGRMPAL
        D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +     ++LY                 SS ++  G +DG+   L
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY----------------NSSSYSNHGLEDGRMPAL

Query:  CTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNS
                EE     +   K D +G    +LL+GSL+ ALCYI ++ +    +   + RIL ++ + D   QY+  MN IF+AQ+  + ID+C + S +S
Subjt:  CTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNS

Query:  AFLQQASYITSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASSVFGETPVEVDSV
          LQQA  IT G+YLK  QM  L QYL  VF  D   R+ L LP  V VD+RA+       +E+  V
Subjt:  AFLQQASYITSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASSVFGETPVEVDSV

Q13889 General transcription factor IIH subunit 31.2e-2933.21Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY---------------NSSSYSNHGLEDGRMPALC
        D+++LLV+++D NP +W   +L  S+F     +  V+   NS L +N+ N++ VI +     ++LY               N   ++  G +DG+     
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY---------------NSSSYSNHGLEDGRMPALC

Query:  TRLLKNLEEFVIGDEQSI--KEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHN
          LL +  E ++ + + +  K D KG    +LL+GSL+ ALCYI ++ +    +   + RIL ++ + D   QY+  MN IF+AQ+  + ID+C + S +
Subjt:  TRLLKNLEEFVIGDEQSI--KEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHN

Query:  SAFLQQASYITSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASSVFGETPVEVDSV
        S  LQQA  IT G+YLK  QM  L QYL  VF  D   R+ L LP  V VD+RA+       +E+  V
Subjt:  SAFLQQASYITSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASSVFGETPVEVDSV

Q86IB5 General transcription factor IIH subunit 35.7e-3236.05Show/hide
Query:  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMP--------ALCTRLLKNLEEFVIGDEQ----SIKEDPKGGTMSSLL
        F+KFL H + F+N+ L+LNQ N++ +I +      +++  S+   +  E   +          L     K ++  ++   Q     IK D +   +SS  
Subjt:  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMP--------ALCTRLLKNLEEFVIGDEQ----SIKEDPKGGTMSSLL

Query:  SGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGVYLKPQQMDGLFQYLSTVFATD
        S S+S+ALCYI ++ R  +   +PRIL    SPD   QY+++MN IFS+Q+  +P+DSC +   +S FLQQAS++TSG+YLKPQ+ + L QYL T F  D
Subjt:  SGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGVYLKPQQMDGLFQYLSTVFATD

Query:  LHSRTFLQLPKSVGVDFRASSVFGETPVEVDSV
          SR  L  P    VD+RAS    +  V++  V
Subjt:  LHSRTFLQLPKSVGVDFRASSVFGETPVEVDSV

Q8LF41 General transcription and DNA repair factor IIH subunit TFB41.5e-9371.84Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGR---MPALCTRLLKNL
        M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI TGY+SC Y+Y+SS  SNHG  +     MPA+   LLK L
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGR---MPALCTRLLKNL

Query:  EEFVIGDEQSIKEDPKGGTM-SSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI
        EEFV  DE+  KE+     + S LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCYIG  NSAFLQQASYI
Subjt:  EEFVIGDEQSIKEDPKGGTM-SSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI

Query:  TSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS
        T GV+  P+Q+DGLFQYL+T+FATDLHSR F+QLPK +GVDFRAS
Subjt:  TSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS

Q8VD76 General transcription factor IIH subunit 34.5e-2934.46Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLED-----GRMPALCT---------
        D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +     + LY      N GL D     G     C          
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLED-----GRMPALCT---------

Query:  RLLKNLEEFVIGDEQSI--KEDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNS
         LL    E +  + + +  K D KG    +LL+GSL+ ALCYI +V ++   +   + RIL ++ + D   QY+  MN IF+AQ+  + ID+C + S +S
Subjt:  RLLKNLEEFVIGDEQSI--KEDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNS

Query:  AFLQQASYITSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASSVFGETPVEVDSV
          LQQA  IT G+YLK  QM  L QYL  VF  D   R+ L LP  + VD+RA+     + +E+  V
Subjt:  AFLQQASYITSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASSVFGETPVEVDSV

Arabidopsis top hitse value%identityAlignment
AT1G18340.1 basal transcription factor complex subunit-related1.1e-9471.84Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGR---MPALCTRLLKNL
        M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI TGY+SC Y+Y+SS  SNHG  +     MPA+   LLK L
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGR---MPALCTRLLKNL

Query:  EEFVIGDEQSIKEDPKGGTM-SSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI
        EEFV  DE+  KE+     + S LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCYIG  NSAFLQQASYI
Subjt:  EEFVIGDEQSIKEDPKGGTM-SSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI

Query:  TSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS
        T GV+  P+Q+DGLFQYL+T+FATDLHSR F+QLPK +GVDFRAS
Subjt:  TSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTT
TCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTTATTGGTACTGGATACGCTTCATGCAAGTATTTATACAACTCAT
CTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAATTCGTGATTGGGGATGAACAGTCCATCAAGGAA
GACCCCAAAGGAGGGACCATGTCCTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCTCGAAT
CCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGATTCATGTTATATTGGTT
CGCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGAGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAATATCTCTCTACTGTTTTTGCCACT
GATTTGCATTCTCGGACCTTCTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTCGGTTTTTGGTGAGACGCCAGTAGAAGTCGATTCAGTGTCTAAACA
GAAGAGAAAAACTCCAGAATGA
mRNA sequenceShow/hide mRNA sequence
CTATTCTGAAACAGCCATGGCTTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTC
TCCCATTCTCCAAGTTTCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTTATTGGTACTGGATACGCTTCATGCAAG
TATTTATACAACTCATCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAATTCGTGATTGGGGATGA
ACAGTCCATCAAGGAAGACCCCAAAGGAGGGACCATGTCCTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCC
ATCCCCAACCTCGAATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGAT
TCATGTTATATTGGTTCGCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGAGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAATATCTCTC
TACTGTTTTTGCCACTGATTTGCATTCTCGGACCTTCTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTCGGTTTTTGGTGAGACGCCAGTAGAAGTCG
ATTCAGTGTCTAAACAGAAGAGAAAAACTCCAGAATGATTTCACTCTGCTAACTGTTCCATTTTTTCCCTCCCTTTCTTGGAGCTGTTTGGAACTGGAATTCATGTAATT
TGCACCGGGCTTGAGCGGAGATGACTTAAAGGAAACAGTTGCTGAAAGAGAGTCGATCTCGACATTATACAATTCAGATCACTAGTTTGAAGTTTGAACATTCTGATCTA
GTGGTCGAACTCAGTTGGATGGGGTAGCATAGAACGATAGCAAGCAAGGTCATGCATCTGTATTTCATCTATCCCAGTTCGATACAAATCTGGTACACGGTTTCAATGGA
ACTTGAGACTTTAACTGGAAAAGTTAGTCCGATGTACCTGCACTGAAAACTTGAATGATTTATAAGTGTATGTAGATTTATATTTTGCTCACGGTTGACAGTATTTCAAA
GCTTACCTTCGTAAAAGTACACAAGGATAGCCACATTGTTTATTTCAAAATTGATGAAGTGTCCAGATTTACTTTA
Protein sequenceShow/hide protein sequence
MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKE
DPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGVYLKPQQMDGLFQYLSTVFAT
DLHSRTFLQLPKSVGVDFRASSVFGETPVEVDSVSKQKRKTPE