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Lsi08G004730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G004730
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChalcone synthase
Genome locationchr08:12474920..12475267
RNA-Seq ExpressionLsi08G004730
SyntenyLsi08G004730
Gene Ontology termsGO:0030639 - polyketide biosynthetic process (biological process)
GO:0016210 - naringenin-chalcone synthase activity (molecular function)
GO:0102128 - chalcone synthase activity (molecular function)
InterPro domainsIPR001099 - Chalcone/stilbene synthase, N-terminal
IPR011141 - Polyketide synthase, type III
IPR016039 - Thiolase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ALJ30352.1 polyketide synthase 2 [Rubus idaeus]7.0e-3264.15Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQPIS+ITHLIFCT+S   +PG D  L  LLGL+ + K+FM+YQQGCF  GT LR+AKD+ ENN GAR+L+VC +ITT+ F  PSEN  D+LVGQALFSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

OMO73324.1 hypothetical protein COLO4_27162 [Corchorus olitorius]4.1e-3263.21Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQP+SNITHLIFCTS   + P  D H +NL+GL HS +KF +Y QGC+ AGTALRL+KDLVENNV +RVL+VC ++   CFH PSE   DILVG A+FSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

PQQ04168.1 4-hydroxycoumarin synthase 1 [Prunus yedoensis var. nudiflora]7.0e-3266.04Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQPISNITHLIFCT+S   +PG D  L  LLGL+ S  +FM+YQQGCF  GTALRLAKD+ ENN GARVLVVC +ITT  F  P+E+  D+LVGQALFSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GA+ ++
Subjt:  GAAVMV

TYK18690.1 chalcone synthase [Cucumis melo var. makuwa]5.0e-3877.68Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLV-ENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFS
        GQP SNITHLIFCT+S NSIPGPDCHLS L  L++STKKFMLY Q CFVAGTALRLAKDL  +NNVG RVLVVCVD+TTI FHGPSE+R DILVGQALFS
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLV-ENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFS

Query:  DGAAVMVTPLAL
           A MV  L L
Subjt:  DGAAVMVTPLAL

XP_022141572.1 chalcone synthase-like [Momordica charantia]1.8e-3269.81Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQPIS ITHLIF T S+NS+PGPD HLSNLLGL  S  K+ML+Q GC  A TALRLAKD+ ENN GARVLVVCVD TTI FH P +   D+LVG A+FSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA +V
Subjt:  GAAVMV

TrEMBL top hitse value%identityAlignment
A0A1R3HSU5 Uncharacterized protein2.0e-3263.21Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQP+SNITHLIFCTS   + P  D H +NL+GL HS +KF +Y QGC+ AGTALRL+KDLVENNV +RVL+VC ++   CFH PSE   DILVG A+FSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

A0A314UZX0 4-hydroxycoumarin synthase 13.4e-3266.04Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQPISNITHLIFCT+S   +PG D  L  LLGL+ S  +FM+YQQGCF  GTALRLAKD+ ENN GARVLVVC +ITT  F  P+E+  D+LVGQALFSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GA+ ++
Subjt:  GAAVMV

A0A314YI68 4-hydroxycoumarin synthase 13.4e-3266.04Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQPISNITHLIFCT+S   +PG D  L  LLGL+ S  +FM+YQQGCF  GTALRLAKD+ ENN GARVLVVC +ITT  F  P+E+  D+LVGQALFSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GA+ ++
Subjt:  GAAVMV

A0A5D3D594 Chalcone synthase2.4e-3877.68Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLV-ENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFS
        GQP SNITHLIFCT+S NSIPGPDCHLS L  L++STKKFMLY Q CFVAGTALRLAKDL  +NNVG RVLVVCVD+TTI FHGPSE+R DILVGQALFS
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLV-ENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFS

Query:  DGAAVMVTPLAL
           A MV  L L
Subjt:  DGAAVMVTPLAL

A0A6J1CK67 chalcone synthase-like8.9e-3369.81Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQPIS ITHLIF T S+NS+PGPD HLSNLLGL  S  K+ML+Q GC  A TALRLAKD+ ENN GARVLVVCVD TTI FH P +   D+LVG A+FSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA +V
Subjt:  GAAVMV

SwissProt top hitse value%identityAlignment
O04111 Chalcone synthase6.0e-3464.15Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQP S ITHL+FCT+S   +PG D  L+ LLGL  S K+FM+YQQGCF  GT LR+AKDL ENN GARVLVVC +IT + F GPSE+  D LVGQALF D
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

P16107 Chalcone synthase6.0e-3465.09Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQP S ITHLIFCT+S   +PG D  L+ LLGL  S K+FM+YQQGCF  GT LRLAKDL ENN GARVLVVC +IT + F GPS++  D LVGQALF D
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

P30080 Chalcone synthase 61.7e-3364.15Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQP S ITHLIFCT+S   +PG D  L+ LLGL  S K++M+YQQGCF  GT LRLAKDL ENN GARVLVVC +IT + F GPS+   D LVGQALF D
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

Q41436 Chalcone synthase 1A1.7e-3365.09Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQP S ITHL+FCT+S   +PG D  L+ LLGL  S K+ M+YQQGCFV GT LRLAKDL ENN GARVLVVC +IT + F GPSE+  D LVGQALF D
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

Q9ZS40 Chalcone synthase 22.3e-3364.15Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        G P S ITHLIFCT+S   +PG D  L+ LLGL  S K+FM+YQQGCF  GT LRLAKDL ENN GARVLVVC +IT + F GPS++  D LVGQALF D
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

Arabidopsis top hitse value%identityAlignment
AT1G02050.1 Chalcone and stilbene synthase family protein2.3e-2044.34Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        G+P+ +ITH+++ +SS   +PG D +LS  LGL +   + MLY  GC+   T LR+AKD+ ENN G+RVL+   + T + F  P++ R   LVG ALF D
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

AT3G52160.1 3-ketoacyl-CoA synthase 152.3e-0428.16Show/hide
Query:  ISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSDGAA
        + +I  L+      N+ P     + N   L H+T+ + L   GC     A+ LAKDL+  + G+  LVV  +I +  ++  S N   +L     F  GAA
Subjt:  ISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSDGAA

Query:  VMV
         ++
Subjt:  VMV

AT4G00040.1 Chalcone and stilbene synthase family protein1.5e-1943.4Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        G+ + +ITHL++ +SS   +PG D +LS  LGL++  ++ MLY  GC+   + LR+AKD+ ENN G+RVL+   + T + F  P++ R   LVG ALF D
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV

AT4G34850.1 Chalcone and stilbene synthase family protein9.5e-1945.28Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        G+ IS+ITH+++ +SS   +PG D +L+  LGL+  T + +LY  GC      LR+AKD+ ENN G+RVL+   + T I F  PS +R   LVG ALF D
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GA  M+
Subjt:  GAAVMV

AT5G13930.1 Chalcone and stilbene synthase family protein8.0e-3462.26Show/hide
Query:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD
        GQP S ITH++FCT+S   +PG D  L+ LLGL  S K+ M+YQQGCF  GT LR+AKDL ENN GARVLVVC +IT + F GPS+   D LVGQALFSD
Subjt:  GQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSD

Query:  GAAVMV
        GAA ++
Subjt:  GAAVMV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAACCAATCTCAAATATTACACATCTCATTTTTTGCACTTCTTCAACCAACTCCATTCCTGGACCTGACTGCCATCTCTCCAACCTTCTTGGACTTAACCACTC
CACAAAAAAATTCATGTTATATCAACAAGGCTGCTTTGTTGCTGGCACTGCCCTTCGTTTAGCCAAGGATCTTGTTGAGAACAACGTTGGTGCTCGTGTTCTTGTGGTTT
GTGTCGATATAACCACCATTTGTTTCCATGGACCGTCAGAAAATCGCTTTGACATTTTGGTAGGTCAAGCCTTATTTTCCGACGGCGCAGCTGTCATGGTAACACCTCTT
GCTCTGATATCATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAACCAATCTCAAATATTACACATCTCATTTTTTGCACTTCTTCAACCAACTCCATTCCTGGACCTGACTGCCATCTCTCCAACCTTCTTGGACTTAACCACTC
CACAAAAAAATTCATGTTATATCAACAAGGCTGCTTTGTTGCTGGCACTGCCCTTCGTTTAGCCAAGGATCTTGTTGAGAACAACGTTGGTGCTCGTGTTCTTGTGGTTT
GTGTCGATATAACCACCATTTGTTTCCATGGACCGTCAGAAAATCGCTTTGACATTTTGGTAGGTCAAGCCTTATTTTCCGACGGCGCAGCTGTCATGGTAACACCTCTT
GCTCTGATATCATGTTAA
Protein sequenceShow/hide protein sequence
MGQPISNITHLIFCTSSTNSIPGPDCHLSNLLGLNHSTKKFMLYQQGCFVAGTALRLAKDLVENNVGARVLVVCVDITTICFHGPSENRFDILVGQALFSDGAAVMVTPL
ALISC