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Lsi08G004780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G004780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr08:12591373..12591801
RNA-Seq ExpressionLsi08G004780
SyntenyLsi08G004780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647204.1 hypothetical protein Csa_019006, partial [Cucumis sativus]1.7e-1163.77Show/hide
Query:  VVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSPSADVGTEAP
        V MVE  +A+ASN AVQ  +GYK G  K+ SVIPK+RKLVKTM+YHSIK F+IS FR S S   GT AP
Subjt:  VVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSPSADVGTEAP

KAG6578935.1 hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sororia]2.1e-0939.5Show/hide
Query:  LKPQPFADKIPSIPIPIPIPIPSAMDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTM
        +KP+P  +K     IP+ IP      +  VG K FP  +I G++  + VRP       +   PA+A+ +N+ VQ             SVIPKKR+LVKTM
Subjt:  LKPQPFADKIPSIPIPIPIPIPSAMDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTM

Query:  IYHSIKDFVISLFRPSPSA
        +YHS+K+F+ S+FR  PSA
Subjt:  IYHSIKDFVISLFRPSPSA

KAG6602131.1 hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia]1.0e-0835.29Show/hide
Query:  MASRISPEDNRIPLLLKPQPFADKIPSIPIPIPIPI-PSAMDVTEVGRKTFPVNLITGTELGV----KVRPE----------------GEWMDVVMVEPA
        M  R+SP+DNR+  L +  P A  +PSI      PI P+  +++ + +   P  +  G    V       PE                G+   V+ + PA
Subjt:  MASRISPEDNRIPLLLKPQPFADKIPSIPIPIPIPI-PSAMDVTEVGRKTFPVNLITGTELGV----KVRPE----------------GEWMDVVMVEPA

Query:  LAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSP
          + +  +   ++GY+AG GK+ SVIPKKRKLVKTM+YH IK+F+ SLFR  P
Subjt:  LAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSP

KAG6602134.1 hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia]1.0e-0839.1Show/hide
Query:  MASRISPEDNRIPLLLKPQPFADKIPSIPIPIPIPI-PSAMDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGG
        M  R+SP+DNR   L +  P A   PS+      PI P   ++  + +   P  +  G    V        + ++  +P  A  S  +V+    Y+AG G
Subjt:  MASRISPEDNRIPLLLKPQPFADKIPSIPIPIPIPI-PSAMDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGG

Query:  KLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSP
        K+ SVIPKKRKLVKTM+YH IKDF+ SLFRP P
Subjt:  KLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSP

KGN47677.1 hypothetical protein Csa_018325 [Cucumis sativus]4.9e-1957.84Show/hide
Query:  MDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSPSADVGTE
        MDV  VG + FP+NL+TG+ELG++VRPEGE M V  VE    +AS++ VQ A+GYK GG K+ SVIP KRKLVK M+Y SIK+FVIS F   PS      
Subjt:  MDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSPSADVGTE

Query:  AP
        AP
Subjt:  AP

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ7 Uncharacterized protein1.4e-0678.38Show/hide
Query:  KAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPS
        + GG K+ SVIPK+RKLVKTMIYHS+KDF+ISLFRPS
Subjt:  KAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPS

A0A0A0KH01 Uncharacterized protein2.4e-1957.84Show/hide
Query:  MDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSPSADVGTE
        MDV  VG + FP+NL+TG+ELG++VRPEGE M V  VE    +AS++ VQ A+GYK GG K+ SVIP KRKLVK M+Y SIK+FVIS F   PS      
Subjt:  MDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSPSADVGTE

Query:  AP
        AP
Subjt:  AP

A0A5D3D590 Uncharacterized protein1.3e-0450.91Show/hide
Query:  PALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSP
        P + + +  A++ AI Y+ G G + SVIPKKRKLVK M+Y  IK+++ SLFRP+P
Subjt:  PALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSP

A0A6J1CJW3 uncharacterized protein LOC1110119636.1e-0749.32Show/hide
Query:  VKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSPSA
        +K  P  +  ++    P +          AIG +A GGK+ SVIPK+R LVKTMIY+ IKDF+ISLFRP PSA
Subjt:  VKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRKLVKTMIYHSIKDFVISLFRPSPSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCAGAATCTCGCCGGAAGACAATCGTATTCCTCTGCTTCTTAAACCCCAACCATTCGCCGACAAAATTCCCTCCATTCCGATTCCGATTCCGATTCCGATTCC
GTCCGCCATGGACGTGACGGAGGTGGGCCGTAAAACGTTTCCGGTGAACTTAATCACCGGAACAGAACTGGGCGTGAAGGTGAGACCCGAAGGAGAGTGGATGGACGTGG
TGATGGTGGAGCCGGCGTTGGCGAAAGCATCCAACCAGGCGGTTCAGACGGCGATCGGGTACAAAGCCGGCGGTGGAAAATTGGGATCTGTAATTCCGAAGAAGAGGAAG
TTAGTGAAGACAATGATATATCACTCCATAAAGGATTTTGTTATATCACTCTTCCGTCCGTCGCCGTCTGCCGACGTCGGTACCGAAGCTCCGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCCAGAATCTCGCCGGAAGACAATCGTATTCCTCTGCTTCTTAAACCCCAACCATTCGCCGACAAAATTCCCTCCATTCCGATTCCGATTCCGATTCCGATTCC
GTCCGCCATGGACGTGACGGAGGTGGGCCGTAAAACGTTTCCGGTGAACTTAATCACCGGAACAGAACTGGGCGTGAAGGTGAGACCCGAAGGAGAGTGGATGGACGTGG
TGATGGTGGAGCCGGCGTTGGCGAAAGCATCCAACCAGGCGGTTCAGACGGCGATCGGGTACAAAGCCGGCGGTGGAAAATTGGGATCTGTAATTCCGAAGAAGAGGAAG
TTAGTGAAGACAATGATATATCACTCCATAAAGGATTTTGTTATATCACTCTTCCGTCCGTCGCCGTCTGCCGACGTCGGTACCGAAGCTCCGTCATAA
Protein sequenceShow/hide protein sequence
MASRISPEDNRIPLLLKPQPFADKIPSIPIPIPIPIPSAMDVTEVGRKTFPVNLITGTELGVKVRPEGEWMDVVMVEPALAKASNQAVQTAIGYKAGGGKLGSVIPKKRK
LVKTMIYHSIKDFVISLFRPSPSADVGTEAPS