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Lsi08G004960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G004960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNIMA-related kinase 4
Genome locationchr08:12819560..12823815
RNA-Seq ExpressionLsi08G004960
SyntenyLsi08G004960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER34891.1 NIMA-related kinase 4 [Striga asiatica]1.3e-0443.8Show/hide
Query:  VCLSPSNSIATFFMLGRSSLFTLTHSLASFATSFICSKFPSVA---IPYSKTSSTRSSSIAYNTYIARFLSSSGPSKHTAFFPVISSISTIPKLYTSLFS
        V +S S S AT F+ G    F+  H  A  A++FI S + S A    P S  S T SSS +  TYIA+F SS    K  A + V SS  T PKLYTSL S
Subjt:  VCLSPSNSIATFFMLGRSSLFTLTHSLASFATSFICSKFPSVA---IPYSKTSSTRSSSIAYNTYIARFLSSSGPSKHTAFFPVISSISTIPKLYTSLFS

Query:  VNSLVKKYSGSKYPIVPCTIV
        VN          YP VPC  V
Subjt:  VNSLVKKYSGSKYPIVPCTIV
KAF5816022.1 hypothetical protein HanXRQr2_Chr03g0129721 [Helianthus annuus]3.4e-0551.43Show/hide
Query:  RSSSIAY--------NTYIARFLSSSGPSKHTAFFPVISSISTIPKLYTSLFSVNSLVKKYSGSKYPIVP
        R S+I+Y          Y+A+F S+   S     FPV+SS  T PKLYTSLF V+ LV KYSGSKYP VP
Subjt:  RSSSIAY--------NTYIARFLSSSGPSKHTAFFPVISSISTIPKLYTSLFSVNSLVKKYSGSKYPIVP
TrEMBL top hitse value%identityAlignment
A0A0E0PTC7 Uncharacterized protein2.2e-0542.74Show/hide
Query:  LSPSNSIATFFMLGRSSLFTLTHSLASFATSFICSKFPSVAIPYSKTSSTRSSSIAYNTY--IARFLSSSGPSKHTAFFPVISSISTIPKLYTSLFSVNS
        L+  N   T  M G S    L H L + ATS+      S+  P    S   S+ + Y         L  +      AFFPVISS ST PKLYTSLFSV+ 
Subjt:  LSPSNSIATFFMLGRSSLFTLTHSLASFATSFICSKFPSVAIPYSKTSSTRSSSIAYNTY--IARFLSSSGPSKHTAFFPVISSISTIPKLYTSLFSVNS

Query:  LVKKYSGSKYPIVPCTI
        L  +YSGS+YP VPCTI
Subjt:  LVKKYSGSKYPIVPCTI
A0A5A7PQL8 NIMA-related kinase 46.3e-0543.8Show/hide
Query:  VCLSPSNSIATFFMLGRSSLFTLTHSLASFATSFICSKFPSVA---IPYSKTSSTRSSSIAYNTYIARFLSSSGPSKHTAFFPVISSISTIPKLYTSLFS
        V +S S S AT F+ G    F+  H  A  A++FI S + S A    P S  S T SSS +  TYIA+F SS    K  A + V SS  T PKLYTSL S
Subjt:  VCLSPSNSIATFFMLGRSSLFTLTHSLASFATSFICSKFPSVA---IPYSKTSSTRSSSIAYNTYIARFLSSSGPSKHTAFFPVISSISTIPKLYTSLFS

Query:  VNSLVKKYSGSKYPIVPCTIV
        VN          YP VPC  V
Subjt:  VNSLVKKYSGSKYPIVPCTIV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCAACCTGCTGCATCGTCTGTCTCAGTCCCTCCAACTCCATGAGTTTGAAGCTCCATCGAACAAATTGTTTCTACCCGATGAACAGAATTCAACCTGCTGCAT
CGTCTGTCTCAGTCCCTCCAACTCCATAGCTACCTTCTTCATGCTGGGTCGCTCCTCCCTTTTTACTCTCACACACTCTCTTGCTAGTTTTGCCACTTCTTTTATTTGCT
CAAAGTTTCCTTCTGTCGCCATTCCCTACTCCAAAACTTCTTCCACGCGATCTTCTTCCATTGCATACAACACATACATCGCTAGATTCCTCTCTTCTTCTGGCCCATCA
AAACACACCGCCTTCTTCCCCGTTATAAGCTCCATAAGCACAATTCCAAAGCTGTACACATCGCTTTTCTCCGTCAACTCACTCGTCAAAAAATATTCTGGATCCAAATA
TCCAATAGTCCCTTGCACCATTGTGGATATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCAACCTGCTGCATCGTCTGTCTCAGTCCCTCCAACTCCATGAGTTTGAAGCTCCATCGAACAAATTGTTTCTACCCGATGAACAGAATTCAACCTGCTGCAT
CGTCTGTCTCAGTCCCTCCAACTCCATAGCTACCTTCTTCATGCTGGGTCGCTCCTCCCTTTTTACTCTCACACACTCTCTTGCTAGTTTTGCCACTTCTTTTATTTGCT
CAAAGTTTCCTTCTGTCGCCATTCCCTACTCCAAAACTTCTTCCACGCGATCTTCTTCCATTGCATACAACACATACATCGCTAGATTCCTCTCTTCTTCTGGCCCATCA
AAACACACCGCCTTCTTCCCCGTTATAAGCTCCATAAGCACAATTCCAAAGCTGTACACATCGCTTTTCTCCGTCAACTCACTCGTCAAAAAATATTCTGGATCCAAATA
TCCAATAGTCCCTTGCACCATTGTGGATATTTGA
Protein sequenceShow/hide protein sequence
MEFNLLHRLSQSLQLHEFEAPSNKLFLPDEQNSTCCIVCLSPSNSIATFFMLGRSSLFTLTHSLASFATSFICSKFPSVAIPYSKTSSTRSSSIAYNTYIARFLSSSGPS
KHTAFFPVISSISTIPKLYTSLFSVNSLVKKYSGSKYPIVPCTIVDI