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Lsi08G005040 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G005040
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr08:12960070..12960369
RNA-Seq ExpressionLsi08G005040
SyntenyLsi08G005040
Gene Ontology termsGO:0044267 - cellular protein metabolic process (biological process)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2906628.1 hypothetical protein DAI22_12g033800 [Oryza sativa Japonica Group]3.0e-0749.06Show/hide
Query:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        + +C VC EGF +  K    ++R+PCSH FH  C+  WLSL + CP+CR PMP
Subjt:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

PQP95452.1 uncharacterized protein Pyn_08210 [Prunus yedoensis var. nudiflora]5.1e-0750Show/hide
Query:  CMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        C++C+E F E+    H+ SRLPCSH++H  C+ +WL   + CPVCR PMP
Subjt:  CMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

XP_015162731.1 PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Solanum tuberosum]5.1e-0752.83Show/hide
Query:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        K++C+VCL+   EET+    V RLPCSHMFH  CV++WL   + CP+CR  MP
Subjt:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

XP_022755027.1 NEP1-interacting protein-like 1 [Durio zibethinus]6.7e-0748.08Show/hide
Query:  EECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        EECM+C+E     T+    V+ +PCSH+FH  C+ +WL+  +RCP+CR PMP
Subjt:  EECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

XP_029116802.1 uncharacterized protein LOC114912798 [Elaeis guineensis]4.6e-0850.94Show/hide
Query:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        +EEC++CL  F  + K    VSR+PCSH FH WC+ +WL     CP+CRS MP
Subjt:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

TrEMBL top hitse value%identityAlignment
A0A0D3HRB9 RING-type domain-containing protein1.5e-0749.06Show/hide
Query:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        + +C VC EGF +  K    ++R+PCSH FH  C+  WLSL + CP+CR PMP
Subjt:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

A0A0E0F9F3 RING-type domain-containing protein2.9e-0850.94Show/hide
Query:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        + +C VCLEGF +  K    ++R+PCSH FH  C+  WL L +RCP+CR PMP
Subjt:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

A0A0E0F9F4 RING-type domain-containing protein2.9e-0850.94Show/hide
Query:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        + +C VCLEGF +  K    ++R+PCSH FH  C+  WL L +RCP+CR PMP
Subjt:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

A0A0E0J6K4 RING-type domain-containing protein5.0e-0844.44Show/hide
Query:  EGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        EG        + +C VC EGF +  K    ++R+PCSH FH  C+  WLSL + CP+CR PMP
Subjt:  EGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

A0A0P0Y6W6 Os12g0142850 protein1.5e-0749.06Show/hide
Query:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        + +C VC EGF +  K    ++R+PCSH FH  C+  WLSL + CP+CR PMP
Subjt:  KEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

SwissProt top hitse value%identityAlignment
Q0V9R0 E3 ubiquitin-protein ligase arkadia3.1e-0733.33Show/hide
Query:  KSLKKSLEGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMPWFQVFILDVDVDVP
        + L    +G   T+   +E+C +CL   +E       V RLPC H+FH  CV QWL  + +CP+CR          +D+D  +P
Subjt:  KSLKKSLEGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMPWFQVFILDVDVDVP

Q6AXU4 E3 ubiquitin-protein ligase RNF1817.0e-0737.14Show/hide
Query:  KSLKKSLEGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        K++ +SL  + +  S  + +C VCL  F+EE     +V  +PC H+FH  C+  WLS    CP+CR  +P
Subjt:  KSLKKSLEGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

Q6NRV8 E3 ubiquitin-protein ligase arkadia-B3.1e-0733.33Show/hide
Query:  KSLKKSLEGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMPWFQVFILDVDVDVP
        + L    +G   T+   +E+C +CL   +E       V RLPC H+FH  CV QWL  + +CP+CR          +D+D  +P
Subjt:  KSLKKSLEGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMPWFQVFILDVDVDVP

Q6ZSG1 E3 ubiquitin-protein ligase RNF1659.1e-0743.75Show/hide
Query:  EECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCR
        E+C +CL   ++       V RLPC H+FH  CV QWL++  +CP+CR
Subjt:  EECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCR

Q8GYT9 E3 ubiquitin-protein ligase SIS33.1e-0748.94Show/hide
Query:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCR
        EC++CLE F       H V  LPC+H FH  C+ QWL L+ +CP CR
Subjt:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCR

Arabidopsis top hitse value%identityAlignment
AT1G74620.1 RING/U-box superfamily protein1.3e-0842Show/hide
Query:  CMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        C +C+E + E +     V++LPC H FH  C+++WL L++ CP+CRS +P
Subjt:  CMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

AT4G26580.1 RING/U-box superfamily protein3.4e-0947.06Show/hide
Query:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        EC +CL  +KE    K  V +LPCSH FH  CV QWL +   CP+C+  +P
Subjt:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

AT4G26580.2 RING/U-box superfamily protein3.4e-0947.06Show/hide
Query:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        EC +CL  +KE    K  V +LPCSH FH  CV QWL +   CP+C+  +P
Subjt:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

AT5G55970.1 RING/U-box superfamily protein1.3e-0845.1Show/hide
Query:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        EC +CL  +K+    K  V +LPCSH FH  CV QWL +   CP+C+  +P
Subjt:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP

AT5G55970.2 RING/U-box superfamily protein1.3e-0845.1Show/hide
Query:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP
        EC +CL  +K+    K  V +LPCSH FH  CV QWL +   CP+C+  +P
Subjt:  ECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCTCAAGTCACTGAAAAAGAGCCTTGAAGGGTCGTGCTTAACGAAGAGTTGTTGTAAAGAGGAGTGCATGGTGTGCTTGGAAGGGTTTAAAGAGGAAACGAAGAC
AAAACATAGTGTAAGTCGGCTTCCATGTTCTCATATGTTTCATTTTTGGTGCGTTTCTCAATGGCTTAGTTTGGATTATCGTTGCCCGGTTTGCCGTTCTCCCATGCCTT
GGTTTCAAGTCTTCATCCTTGATGTCGACGTTGATGTGCCTTTTCCTTTTAACGTAATTCCATTACACCTCTTACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCTCAAGTCACTGAAAAAGAGCCTTGAAGGGTCGTGCTTAACGAAGAGTTGTTGTAAAGAGGAGTGCATGGTGTGCTTGGAAGGGTTTAAAGAGGAAACGAAGAC
AAAACATAGTGTAAGTCGGCTTCCATGTTCTCATATGTTTCATTTTTGGTGCGTTTCTCAATGGCTTAGTTTGGATTATCGTTGCCCGGTTTGCCGTTCTCCCATGCCTT
GGTTTCAAGTCTTCATCCTTGATGTCGACGTTGATGTGCCTTTTCCTTTTAACGTAATTCCATTACACCTCTTACCTTGA
Protein sequenceShow/hide protein sequence
MVLKSLKKSLEGSCLTKSCCKEECMVCLEGFKEETKTKHSVSRLPCSHMFHFWCVSQWLSLDYRCPVCRSPMPWFQVFILDVDVDVPFPFNVIPLHLLP