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Lsi08G005370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G005370
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA-binding protein 2-like
Genome locationchr08:13351148..13353651
RNA-Seq ExpressionLsi08G005370
SyntenyLsi08G005370
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031743539.1 RNA-binding protein 2 isoform X5 [Cucumis sativus]1.1e-0866.67Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTI
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K   Y  +L  +C +
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTI

XP_038884975.1 RNA-binding protein 2-like isoform X1 [Benincasa hispida]2.9e-0968.63Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTI
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K   Y  +L  +CT+
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTI

XP_038884976.1 RNA-binding protein 2-like isoform X2 [Benincasa hispida]2.9e-0968.63Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTI
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K   Y  +L  +CT+
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTI

XP_038884977.1 RNA-binding protein 2-like isoform X3 [Benincasa hispida]2.9e-0968.63Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTI
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K   Y  +L  +CT+
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTI

XP_038884978.1 RNA-binding protein 2-like isoform X4 [Benincasa hispida]6.2e-1249.09Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTIAGIWRVPVPSNTPKSAYSAGHSSHTNMQYLRCQEATAINESFSPSSCES
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K   Y  +L  +CT+          +T  S +     S     Y        IN S SP    S
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTIAGIWRVPVPSNTPKSAYSAGHSSHTNMQYLRCQEATAINESFSPSSCES

Query:  VMVVKGWPQC
        VMV+KGWPQC
Subjt:  VMVVKGWPQC

TrEMBL top hitse value%identityAlignment
A0A0A0KCN5 RRM domain-containing protein6.3e-1862.5Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKG--LMYFYSLHPNCTIAGIWRVPVPSNTPKSAYSAGHSSHTNM
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K   ++   +      IAGIWRVP  SNTPKSAY  GHS++ ++
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKG--LMYFYSLHPNCTIAGIWRVPVPSNTPKSAYSAGHSSHTNM

A0A6J1CKA2 RNA-binding protein 2-like2.6e-0883.78Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAK
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAK

A0A6J1FKI7 RNA-binding protein 2-like isoform X12.6e-0883.78Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAK
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAK

A0A6J1JXN9 RNA-binding protein 2-like isoform X22.6e-0883.78Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAK
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAK

A0A6J1JZU6 RNA-binding protein 2-like isoform X12.6e-0883.78Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAK
        S + GYKMDEQDPESNYLRLQFSRHPGPRSGSG+  K
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAK

SwissProt top hitse value%identityAlignment
G7ID19 RNA-binding protein 21.0e-0470.97Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG
        S + GYK+DE +PES+YLRLQFSR PG RSG
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG

Q8H0P8 RNA-binding protein 11.4e-0663.16Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKG
        S + GYK+DE +PES++LRLQFSR+PGPRSG G  + G
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding3.0e-0458.06Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG
        S +  Y+MDE +P+S  LRLQF R+PGPR G
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG

AT1G21320.2 nucleotide binding;nucleic acid binding3.0e-0458.06Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG
        S +  Y+MDE +P+S  LRLQF R+PGPR G
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG

AT1G76940.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.9e-0458.06Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG
        S + GY+MDE + +S +LRLQFSR PG R G
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG

AT1G76940.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.9e-0458.06Show/hide
Query:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG
        S + GY+MDE + +S +LRLQFSR PG R G
Subjt:  SEMCGYKMDEQDPESNYLRLQFSRHPGPRSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTAGAGCAGTGCTCGGAGATGTGTGGTTATAAAATGGACGAACAAGATCCCGAATCTAATTATTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCTGG
TTCAGGAACTGTGGCAAAAGGTTTGATGTATTTTTACTCATTGCATCCCAATTGTACTATAGCAGGAATTTGGAGAGTTCCTGTACCCTCCAACACACCAAAATCAGCCT
ATTCCGCTGGTCATTCCTCCCATACCAATATGCAATACCTCAGATGTCAAGAGGCGACTGCTATTAATGAGTCATTCTCCCCCTCTTCATGTGAGAGTGTGATGGTGGTA
AAAGGTTGGCCCCAGTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTAGAGCAGTGCTCGGAGATGTGTGGTTATAAAATGGACGAACAAGATCCCGAATCTAATTATTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCTGG
TTCAGGAACTGTGGCAAAAGGTTTGATGTATTTTTACTCATTGCATCCCAATTGTACTATAGCAGGAATTTGGAGAGTTCCTGTACCCTCCAACACACCAAAATCAGCCT
ATTCCGCTGGTCATTCCTCCCATACCAATATGCAATACCTCAGATGTCAAGAGGCGACTGCTATTAATGAGTCATTCTCCCCCTCTTCATGTGAGAGTGTGATGGTGGTA
AAAGGTTGGCCCCAGTGTTGATTTTGCATCCCAAACAGTTCTGATTTGAACTTTCTATAGGTTTTTAGACCCACACCATAGAAAAAACTTCATGAAAACTTAATAAGTGC
CAGAGGCCAAGTTTTGAAGCAGAACTAAAAGCCCATTTGCTTGGAATTGGAGGGAAAAAAGGGTTCTTCAACTGCAACTGCAATGCCCCCCTTTGTTATCTACCTTCTCC
TTGCACTGGTGTATTTGAATCTGCCATCAAAATTTAGTGCAGATGCAGAATATGTTCATTATCCACCTCCTTTACAAAAAAGGCATAAGCAATCAGAGCAGTCAGTGCCA
CAACCCCCTGTTTCTGAGCCAATAGTTCCCTATTTTCCCTTTGTATACAGTCCAATCCCATCCCCATCTGAGAGGCCTTATGAACCACCCTCATCACCACCACTAAAGCA
GTCCCAACCGCCATTATCTCCATTTTCCGAGCCTCTAGTTCCTTATTTTCCTTTTGTATATATACCAACACCATCCCCAGCTCAAAAGCCTTATGAAGATGCATCACCTT
CCCCATCTCCTGTGTTCACAAGACCTGTAGTTCCTTATTATCCCTTCTGATTTCCACCTCCTTCCCCTTGAAAACACCTCTATCCTCCAAATCCGATCGACCACCTTCAA
TCGCCTTCACCTCTGCCTCCGCCTCCTTACTAAACACTACTATTTGCATCCACAACATGATGATATCTATGATAAAAGCTTACTTCTTCCTGGAAGATGTTTAGTTTTTG
CTGTTATTGATATATTTATATGCTCATTGCACTCGAATCTCTCTGGCTTTCGGGTTATGTTCTTATTCTCTGCATTAAGTTTGTATTGTTCTTGTCACCCTGTTTGTATT
GTACATACTGATTCTGGAAATATTTCTTATCCAAGAATAATAATAATGTATCTTACCTCG
Protein sequenceShow/hide protein sequence
MQLEQCSEMCGYKMDEQDPESNYLRLQFSRHPGPRSGSGTVAKGLMYFYSLHPNCTIAGIWRVPVPSNTPKSAYSAGHSSHTNMQYLRCQEATAINESFSPSSCESVMVV
KGWPQC