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Lsi08G005380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G005380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionExtensin-3-like
Genome locationchr08:13415216..13415641
RNA-Seq ExpressionLsi08G005380
SyntenyLsi08G005380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058946.1 extensin-3-like [Cucumis melo var. makuwa]2.5e-2359.52Show/hide
Query:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS
        MPLLS NLPSNFA H+I P   SPPS+    PPTT+PIVPY+PFI PP P KK  KHT SP     +  GRPIVPYYP+KF PPP  K  +PPP YHV  
Subjt:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS

Query:  PPASPQSAKKHYISQARRSPPPPPPK
        P   PQ AKK ++S AR++ P PPP+
Subjt:  PPASPQSAKKHYISQARRSPPPPPPK

KAA0058948.1 extensin-3-like [Cucumis melo var. makuwa]2.0e-2061.9Show/hide
Query:  PPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPP
        P  TRPIVPY+PFIFPP   K   +HT    PLPP  Q   RPIVPYYP+KFPPPPS K+ NPP SYH   PP  P  AKK Y+S+ RR+ PPPPPK  P
Subjt:  PPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPP

Query:  YQWPR
        YQWP+
Subjt:  YQWPR

KAE8647164.1 hypothetical protein Csa_018816, partial [Cucumis sativus]1.2e-2558.65Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSP
        M LLSLNLPSN A H I PS    P L PP TRPIVP++PF F P P +K ++HT    P PP+ Q   RPIVPY+P+KFPPPPS K+ NPPPSYH   P
Subjt:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSP

Query:  PASPQSAKKHYISQARRSPPPPPPKLPPYQWPR
        PA    A+K Y+S+ RR+ PPPPP + PYQWP+
Subjt:  PASPQSAKKHYISQARRSPPPPPPKLPPYQWPR

TYK10982.1 extensin-3-like [Cucumis melo var. makuwa]2.5e-2359.52Show/hide
Query:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS
        MPLLS NLPSNFA H+I P   SPPS+    PPTT+PIVPY+PFI PP P KK  KHT SP     +  GRPIVPYYP+KF PPP  K  +PPP YHV  
Subjt:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS

Query:  PPASPQSAKKHYISQARRSPPPPPPK
        P   PQ AKK ++S AR++ P PPP+
Subjt:  PPASPQSAKKHYISQARRSPPPPPPK

XP_008466986.1 PREDICTED: extensin-3-like, partial [Cucumis melo]3.6e-2261.54Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPP---TTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHV
        +PLLSLNLPSNFAAH+I    PS  L PPP    TRPIVPY+PFIFPP   K   +HT    PLPP  Q   RPIVPYYP+KFPPPPS K+ NPP SYH 
Subjt:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPP---TTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHV

Query:  LSPPASPQSAKKHYISQ
          PP  P  AKK Y+S+
Subjt:  LSPPASPQSAKKHYISQ

TrEMBL top hitse value%identityAlignment
A0A0A0KD80 Uncharacterized protein5.6e-2959.03Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSP
        M LLSLNLPSN A H I PS    P L PP TRPIVP++PF F P P +K ++HT    P PP+ Q   RPIVPY+P+KFPPPPS K+ NPPPSYH   P
Subjt:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSP

Query:  PASPQSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPPF
        PA    A+K Y+S+ RR+ PPPPP + PYQWP+  +R SPPPPF
Subjt:  PASPQSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPPF

A0A1S3CSG8 extensin-3-like1.8e-2261.54Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPP---TTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHV
        +PLLSLNLPSNFAAH+I    PS  L PPP    TRPIVPY+PFIFPP   K   +HT    PLPP  Q   RPIVPYYP+KFPPPPS K+ NPP SYH 
Subjt:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPP---TTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHV

Query:  LSPPASPQSAKKHYISQ
          PP  P  AKK Y+S+
Subjt:  LSPPASPQSAKKHYISQ

A0A5A7UXN4 Extensin-3-like1.2e-2359.52Show/hide
Query:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS
        MPLLS NLPSNFA H+I P   SPPS+    PPTT+PIVPY+PFI PP P KK  KHT SP     +  GRPIVPYYP+KF PPP  K  +PPP YHV  
Subjt:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS

Query:  PPASPQSAKKHYISQARRSPPPPPPK
        P   PQ AKK ++S AR++ P PPP+
Subjt:  PPASPQSAKKHYISQARRSPPPPPPK

A0A5D3CI60 Extensin-3-like1.2e-2359.52Show/hide
Query:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS
        MPLLS NLPSNFA H+I P   SPPS+    PPTT+PIVPY+PFI PP P KK  KHT SP     +  GRPIVPYYP+KF PPP  K  +PPP YHV  
Subjt:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS

Query:  PPASPQSAKKHYISQARRSPPPPPPK
        P   PQ AKK ++S AR++ P PPP+
Subjt:  PPASPQSAKKHYISQARRSPPPPPPK

A0A5D3CVI1 Extensin-3-like9.6e-2161.9Show/hide
Query:  PPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPP
        P  TRPIVPY+PFIFPP   K   +HT    PLPP  Q   RPIVPYYP+KFPPPPS K+ NPP SYH   PP  P  AKK Y+S+ RR+ PPPPPK  P
Subjt:  PPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPP

Query:  YQWPR
        YQWP+
Subjt:  YQWPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G13340.1 Leucine-rich repeat (LRR) family protein4.7e-0438.13Show/hide
Query:  PLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHTSPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASP
        PL   +LPS      I  +PP+L   PPP+  P  P Y    PP P   +Y    P PP          P  P   PPPP    P PPP Y    PP SP
Subjt:  PLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHTSPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASP

Query:  QSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPP
                S     PPPPPP  P Y  P  P+  SPPPP
Subjt:  QSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCCGTCGTTGCCGTTATTGCCGCCTCCGACCACTAGACCTATAGTTCC
TTATTACCCTTTTATATTCCCTCCTCATCCATCTAAAAAGATTTATAAACACACATCGCCACTGCCACCGTCGCTGCAGGGATCGGGAAGGCCAATAGTTCCTTATTATC
CCTTTAAATTTCCACCACCTCCATCAAGTAAACGCCCCAATCCTCCTCCGAGCTACCATGTCCTTTCCCCACCCGCGTCACCACAGTCAGCCAAGAAGCATTATATATCT
CAGGCAAGGCGGTCACCACCACCGCCACCACCTAAGTTGCCGCCGTATCAGTGGCCAAGGGAGCCCCTCCGTGGATCGCCCCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCCGTCGTTGCCGTTATTGCCGCCTCCGACCACTAGACCTATAGTTCC
TTATTACCCTTTTATATTCCCTCCTCATCCATCTAAAAAGATTTATAAACACACATCGCCACTGCCACCGTCGCTGCAGGGATCGGGAAGGCCAATAGTTCCTTATTATC
CCTTTAAATTTCCACCACCTCCATCAAGTAAACGCCCCAATCCTCCTCCGAGCTACCATGTCCTTTCCCCACCCGCGTCACCACAGTCAGCCAAGAAGCATTATATATCT
CAGGCAAGGCGGTCACCACCACCGCCACCACCTAAGTTGCCGCCGTATCAGTGGCCAAGGGAGCCCCTCCGTGGATCGCCCCCACCTCCTTTCTAA
Protein sequenceShow/hide protein sequence
MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHTSPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYIS
QARRSPPPPPPKLPPYQWPREPLRGSPPPPF