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Lsi08G005400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G005400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionextensin-like
Genome locationchr08:13461637..13461936
RNA-Seq ExpressionLsi08G005400
SyntenyLsi08G005400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058957.1 hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa]5.5e-1765.35Show/hide
Query:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP--RLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPP
        MGF  LASYL  LLIAFF LNLP+KLTAHYIH SS S N Y Y  P   LPP PPICR  APP P KKQ + K LP   PP PP   WPR+FT KS PPP
Subjt:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP--RLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPP

Query:  F
        F
Subjt:  F

KAG6578902.1 hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sororia]6.7e-0748.48Show/hide
Query:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF
        MG +I  SY   LLI F SL LPSKLTA+YIH            PP  PP P +  H APP P KK+Y+FK     PPP  P   WP +F  KS PPP+
Subjt:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF

TYK29731.1 hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]2.3e-1551.43Show/hide
Query:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSS-ISINHYKYKP---PRL----------------PPSPPICRH--AAPPLPPKKQYEFKPLP----
        MGFVILASYL FLL AFFSLNLPSKLTAHYIHPSS   +  YK  P   PRL                PPSP   RH    PP P KK+Y+FKP P    
Subjt:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSS-ISINHYKYKP---PRL----------------PPSPPICRH--AAPPLPPKKQYEFKPLP----

Query:  ----LTPPPL-----------PPKSTWPRKFTRKSSPPPF
               PPL           PPK +WPRKF R S PPPF
Subjt:  ----LTPPPL-----------PPKSTWPRKFTRKSSPPPF

XP_022993352.1 extensin-like [Cucurbita maxima]3.0e-0750.47Show/hide
Query:  MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP------RLP-PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTR
        MG +ILAS YL  LLIA  SL+LPSKL A  +HPS  + N ++Y+PP      +LP P P +C   APP PPK +++FK  P  P  +PP   W RKFT 
Subjt:  MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP------RLP-PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTR

Query:  KSSPPPF
         S PPPF
Subjt:  KSSPPPF

XP_023551507.1 extensin-3-like [Cucurbita pepo subsp. pepo]3.2e-0950Show/hide
Query:  MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINH-YKYKPPRLP---------PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRK
        MG +IL S YL  LLIA  SL+LPSKL A  +HPS  +  H Y+  PP LP         P P +C   APP PPK +++FKP P  P P+P    W RK
Subjt:  MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINH-YKYKPPRLP---------PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRK

Query:  FTRKSSPPPF
        FT KS PPPF
Subjt:  FTRKSSPPPF

TrEMBL top hitse value%identityAlignment
A0A0A0KI69 Uncharacterized protein1.5e-2069.31Show/hide
Query:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLP--PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPP
        MGF  LASYL  LLIAFF LNLPSKLTAHYIH SS S N Y+Y PP LP  P PPICR  APP P KKQ + KPLP   PP PPK  WPR+FT KS PPP
Subjt:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLP--PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPP

Query:  F
        F
Subjt:  F

A0A5A7UW72 Uncharacterized protein2.7e-1765.35Show/hide
Query:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP--RLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPP
        MGF  LASYL  LLIAFF LNLP+KLTAHYIH SS S N Y Y  P   LPP PPICR  APP P KKQ + K LP   PP PP   WPR+FT KS PPP
Subjt:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP--RLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPP

Query:  F
        F
Subjt:  F

A0A5D3E2A1 Uncharacterized protein1.1e-1551.43Show/hide
Query:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSS-ISINHYKYKP---PRL----------------PPSPPICRH--AAPPLPPKKQYEFKPLP----
        MGFVILASYL FLL AFFSLNLPSKLTAHYIHPSS   +  YK  P   PRL                PPSP   RH    PP P KK+Y+FKP P    
Subjt:  MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSS-ISINHYKYKP---PRL----------------PPSPPICRH--AAPPLPPKKQYEFKPLP----

Query:  ----LTPPPL-----------PPKSTWPRKFTRKSSPPPF
               PPL           PPK +WPRKF R S PPPF
Subjt:  ----LTPPPL-----------PPKSTWPRKFTRKSSPPPF

A0A6J1FFZ9 extensin-like1.6e-0647.75Show/hide
Query:  MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINH-YKYKPPRLP---------PSPPICRH-AAPPLPPKKQYEFKPLPLTPPPLPPKSTWPR
        MG +IL+S YL  LLIA  SL+LPSKL A  +HPS  +  H Y+  PP LP         P P +C   A PP PPK +++FK  P  P  +PP   W R
Subjt:  MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINH-YKYKPPRLP---------PSPPICRH-AAPPLPPKKQYEFKPLPLTPPPLPPKSTWPR

Query:  KFTRKSSPPPF
        KFT  S PPPF
Subjt:  KFTRKSSPPPF

A0A6J1JSJ5 extensin-like1.5e-0750.47Show/hide
Query:  MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP------RLP-PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTR
        MG +ILAS YL  LLIA  SL+LPSKL A  +HPS  + N ++Y+PP      +LP P P +C   APP PPK +++FK  P  P  +PP   W RKFT 
Subjt:  MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP------RLP-PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTR

Query:  KSSPPPF
         S PPPF
Subjt:  KSSPPPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTTGTAATATTGGCTTCATATCTTTCCTTCCTCCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCATCCATCTTCCATATC
CATCAACCATTACAAATACAAACCTCCACGGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGC
CATTGACGCCGCCACCGCTGCCGCCCAAGTCCACATGGCCACGAAAGTTCACTCGTAAATCGTCTCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTTGTAATATTGGCTTCATATCTTTCCTTCCTCCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCATCCATCTTCCATATC
CATCAACCATTACAAATACAAACCTCCACGGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGC
CATTGACGCCGCCACCGCTGCCGCCCAAGTCCACATGGCCACGAAAGTTCACTCGTAAATCGTCTCCACCTCCTTTCTAA
Protein sequenceShow/hide protein sequence
MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF