CuGenDBv2

Gene ID	Lsi08G005920
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat protein
Genome location	chr08:14213491..14218775
RNA-Seq Expression	Lsi08G005920
Synteny	Lsi08G005920
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140944.1 uncharacterized protein LOC101218374 [Cucumis sativus]

1.5e-92

83.02

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Query:  MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSESEIREVEET S SELQPL+E+ NPS NSK+VK KVPE+EIHL+RQGKGPIDVFKSSLGGWDQDQ+EVRDILDKYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTR
        PRNGRSILTYRDGAEIFIDGEPK                      DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKK N+TGNFPPWILACVVIVFTR
Subjt:  PRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTR

Query:  SRKRTRDLLKKY
        SRKRT+DLLKKY
Subjt:  SRKRTRDLLKKY

XP_008456707.1 PREDICTED: uncharacterized protein LOC103496571 [Cucumis melo]

7.9e-94

84.43

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Query:  MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSE+EIREV+ET S SELQPL+E+QNPS NSKTVK KVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQ+EVRDILDKYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTR
        PRNGRSILTYRDGAEIFIDGEPK                      DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKK N+TGNFPPWILACVVIVFTR
Subjt:  PRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTR

Query:  SRKRTRDLLKKY
        SRKRTRDLLKKY
Subjt:  SRKRTRDLLKKY

XP_022990468.1 uncharacterized protein LOC111487320 [Cucurbita maxima]

1.7e-88

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Query:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF
        E  QSESEIRE+EET SNSELQPL++SQNPS NS+TVK KVPEVEIHLYRQGKGPIDVFKSSLGGW+QDQ+EVR+ILDKYGFKSVFAFKPDSGRGVPIRF
Subjt:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF

Query:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFL--SRDSQGWMKKFNVTGNFPPWILACVVIV
        NPRNGRSILTYRDGAEI+IDGEPK                      DSLIKPVTRI+F VAIITILIT L  SR+SQGWMKK N+TGNFPPWILACVVIV
Subjt:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFL--SRDSQGWMKKFNVTGNFPPWILACVVIV

Query:  FTRSRKRTRDLLKKY
        FTRSRKRTRDLLKKY
Subjt:  FTRSRKRTRDLLKKY

XP_023518857.1 uncharacterized protein LOC111782248 [Cucurbita pepo subsp. pepo]

2.5e-87

79.07

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Query:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF
        E  QSESEIRE+EET SNSELQPL++S N S NSKTVK KVPEVEIHLYRQGKGPIDVFKSSLGGW+QDQ+EVR+ILDKYGFKSVFAFKPDSGRGVPIRF
Subjt:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF

Query:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFL--SRDSQGWMKKFNVTGNFPPWILACVVIV
        NPRNGRSILTYRDGAEI+IDGEPK                      DSLIKPVTRI+F VAIITI+IT L  SR+SQGWMKK N+TGNFPPWILACVVIV
Subjt:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFL--SRDSQGWMKKFNVTGNFPPWILACVVIV

Query:  FTRSRKRTRDLLKKY
        FTRSRKRTRDLLKKY
Subjt:  FTRSRKRTRDLLKKY

XP_038884244.1 uncharacterized protein LOC120075142 [Benincasa hispida]

9.3e-95

83.26

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Query:  GREMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPI
        GR+MDQSESEIREVE+T S SELQPL+ESQNP+ NSK V+ KVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQ+EVRDIL+KYGFKSVFAFKPDSGRGVPI
Subjt:  GREMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPI

Query:  RFNPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIV
        RFNPRNGRSILTYRDGAEIFIDGEPK                      DSLIKPVTRIIFGVA+ITILITFLSRDSQGWMKKFN+TGNFPPWILACVVIV
Subjt:  RFNPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIV

Query:  FTRSRKRTRDLLKKY
        FTRSRKRTRDLLKKY
Subjt:  FTRSRKRTRDLLKKY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9G4 Uncharacterized protein

7.2e-93

83.02

Show/hide

Query:  MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSESEIREVEET S SELQPL+E+ NPS NSK+VK KVPE+EIHL+RQGKGPIDVFKSSLGGWDQDQ+EVRDILDKYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTR
        PRNGRSILTYRDGAEIFIDGEPK                      DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKK N+TGNFPPWILACVVIVFTR
Subjt:  PRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTR

Query:  SRKRTRDLLKKY
        SRKRT+DLLKKY
Subjt:  SRKRTRDLLKKY

A0A1S3C3V7 uncharacterized protein LOC103496571

3.8e-94

84.43

Show/hide

Query:  MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSE+EIREV+ET S SELQPL+E+QNPS NSKTVK KVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQ+EVRDILDKYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTR
        PRNGRSILTYRDGAEIFIDGEPK                      DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKK N+TGNFPPWILACVVIVFTR
Subjt:  PRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTR

Query:  SRKRTRDLLKKY
        SRKRTRDLLKKY
Subjt:  SRKRTRDLLKKY

A0A6J1BYH2 uncharacterized protein LOC111006735

1.3e-86

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Query:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF
        E  Q+ESEIRE+EET SNSE QPL++SQNPS +SK VK KVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQ+E+R+ILDKYGFKS FAFKP++GRGVPIRF
Subjt:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF

Query:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFT
        NPRNGRSILTYRDGAEI+IDGEPK                      DSLIKP+TRIIFGVAI+TILITFLSR+SQG MKK N++GNFPPWILACVVIVFT
Subjt:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFT

Query:  RSRKRTRDLLKKY
        RSRKRTRDLLKK+
Subjt:  RSRKRTRDLLKKY

A0A6J1HAT7 uncharacterized protein LOC111461110

1.7e-86

78.6

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Query:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF
        E  QSESEIRE+EET SNSELQPL++SQNPS NSKTVK KVPEVEIHLYRQGKGPIDVFKSSLGGW+QDQ+EVR+ILDKYGFKSVFAFKPDSGRGVPIRF
Subjt:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF

Query:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFL--SRDSQGWMKKFNVTGNFPPWILACVVIV
        NPRNGRSILTYR GAEI+IDGEPK                      DSLIKPVT I+F VAIITI+IT L  SR SQGWMK  N+TGNFPPWILACVVIV
Subjt:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFL--SRDSQGWMKKFNVTGNFPPWILACVVIV

Query:  FTRSRKRTRDLLKKY
        FTRSRKRTRDLLKKY
Subjt:  FTRSRKRTRDLLKKY

A0A6J1JTD1 uncharacterized protein LOC111487320

8.3e-89

Show/hide

Query:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF
        E  QSESEIRE+EET SNSELQPL++SQNPS NS+TVK KVPEVEIHLYRQGKGPIDVFKSSLGGW+QDQ+EVR+ILDKYGFKSVFAFKPDSGRGVPIRF
Subjt:  EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRF

Query:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFL--SRDSQGWMKKFNVTGNFPPWILACVVIV
        NPRNGRSILTYRDGAEI+IDGEPK                      DSLIKPVTRI+F VAIITILIT L  SR+SQGWMKK N+TGNFPPWILACVVIV
Subjt:  NPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFL--SRDSQGWMKKFNVTGNFPPWILACVVIV

Query:  FTRSRKRTRDLLKKY
        FTRSRKRTRDLLKKY
Subjt:  FTRSRKRTRDLLKKY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71780.1 unknown protein

2.2e-62

57.28

Show/hide

Query:  REVEETCSNSELQPLIESQNP--SLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRS
        +E+EET       PL+E+  P   L S T   KVPEVEIHLY+ GKGPIDVFKS+LGG++QDQ+EVR IL+KYG K++FAF  + GR VPIRF+PRNGRS
Subjt:  REVEETCSNSELQPLIESQNP--SLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRS

Query:  ILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTRSRKRTR
        +L YRDGA I+IDGEP                      +DSL+KP+TRII GV I+T+LITFL +D   W+K     G FPPW+LAC+VIVFTR+RKRTR
Subjt:  ILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTRSRKRTR

Query:  DLLKKY
        D  KKY
Subjt:  DLLKKY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGGCGCGAAATGGATCAGAGCGAGAGCGAAATCCGAGAAGTTGAAGAAACATGCTCCAACTCGGAGCTGCAACCTCTCATCGAGAGCCAGAATCCTAGTTTGAACTC
CAAAACTGTGAAGATGAAGGTTCCGGAGGTTGAGATCCATCTTTATCGCCAGGGCAAAGGTCCGATCGATGTGTTTAAATCAAGTCTTGGTGGTTGGGATCAAGACCAGA
TTGAGGTCCGAGATATTCTTGACAAATACGGGTTCAAGTCCGTATTCGCCTTTAAACCTGACTCCGGTCGTGGCGTCCCGATTCGATTCAACCCTAGAAATGGCAGGTCT
ATACTGACTTACAGAGATGGAGCCGAAATTTTCATCGACGGAGAGCCTAAGATTCAACCATGTAATCCTTTGATCTCTTGTGGTCCACGTGGTCGTCCCTCAACCTGCGG
TGCACGGGATTCCCTGATCAAACCAGTAACCAGGATCATTTTCGGCGTGGCAATTATAACCATTTTGATAACGTTTCTCTCTCGAGACTCACAAGGGTGGATGAAGAAAT
TTAATGTCACTGGGAACTTCCCTCCTTGGATTCTAGCTTGTGTCGTTATCGTCTTTACGCGCTCGAGGAAGAGAACTAGGGACTTGCTTAAAAAGTACGATAAGCAGCCT
CTGTTTAGGGACAGAAAAGTGGACATGTTTGACTTGAATATGTTTGAGTTTGAGCCATGGTTTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MGREMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRS
ILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTRSRKRTRDLLKKYDKQP
LFRDRKVDMFDLNMFEFEPWF

Lsi08G005920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome