; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G005960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G005960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr08:14247046..14249180
RNA-Seq ExpressionLsi08G005960
SyntenyLsi08G005960
Gene Ontology termsGO:0080156 - mitochondrial mRNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031654.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.1e-12077.51Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAKYKALWSH----
        ++VCNVVIDMYAKCGS+DKAY VFENMRCDKSLITWNTMIMA AMHGDGY+ALDLF++LGRSGMSP+A    A     N  G  E G K   L +     
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAKYKALWSH----

Query:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                     GRAGRLKEAY+IVNS+ FPNMVLWQTLLGACRTYG+VEMAELAS KLVEMGFI+CGDFVLLSNVYAAR+RWDDVGRVRDAMR RDVK
Subjt:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQ
        KTPGFSYIE+KGKM++FVYGDQSHSSCREIYAKLDEI  RIKAYGY A+T NVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEG P Q
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQ

XP_008456696.1 PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Cucumis melo]1.6e-12077.24Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAKYKALWSH----
        ++VCNVVIDMYAKCGS+DKAY VFENMRCDKSLITWNTMIMA AMHGDGY+ALDLF++LGRSGMSP+A    A     N  G  E G K   L +     
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAKYKALWSH----

Query:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                     GRAGRLKEAY+IVNS+ FPNMVLWQTLLGACRTYG+VEMAELAS KLVEMGFI+CGDFVLLSNVYAAR+RWDDVGRVRDAMR RDVK
Subjt:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM
        KTPGFSYIE+KGKM++FVYGDQSHSSCREIYAKLDEI  RIKAYGY A+T NVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEG P Q+
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM

XP_031743171.1 pentatricopeptide repeat-containing protein At1g34160 [Cucumis sativus]1.4e-12177.93Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAK-YKALWSH---
        ++VCNVVIDMYAKCGS+DKAY VFENMRCDKSLITWNTMIMA AMHGDG+KALDLFE+LGRSGMSP+A    A     N  G  E G K + ++      
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAK-YKALWSH---

Query:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                     GRAGRLKEAY+IV+S+ FPNMVLWQTLLGACRTYG+VEMAELASRKLVEMGFI+CGDFVLLSNVYAAR+RWDDVGRVRDAMRRRDVK
Subjt:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM
        KTPGFSYIE+KGKM+KFV GDQSHSSCREIYAKLDEI  RIKAYGY A+T NVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP Q+
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM

XP_038885002.1 pentatricopeptide repeat-containing protein At1g34160 isoform X1 [Benincasa hispida]9.0e-12478.19Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEA---------------------------RRGWA
        ++VCNVVIDMYAKCGSVDKAY VFENMRC+KSLITWNTMIMA AMHGDGYKA DLFE++ RSGMSP+A                           +RG A
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEA---------------------------RRGWA

Query:  EAVQFNGAKEVGAKYKALWSHGRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRD
          +     K  GA    L   GRAGRLKEAYEIVNSM FPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFI+CGDFVLLSNVYA R+RWDDVGRVRD
Subjt:  EAVQFNGAKEVGAKYKALWSHGRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRD

Query:  AMRRRDVKKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM
        AMRRRDVKKTPGFSYIEVKGKMHKFVYGDQSH S REIYAKLDEIKFRIKAYGY AETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP Q+
Subjt:  AMRRRDVKKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM

XP_038885014.1 pentatricopeptide repeat-containing protein At1g34160 isoform X2 [Benincasa hispida]9.0e-12478.19Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEA---------------------------RRGWA
        ++VCNVVIDMYAKCGSVDKAY VFENMRC+KSLITWNTMIMA AMHGDGYKA DLFE++ RSGMSP+A                           +RG A
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEA---------------------------RRGWA

Query:  EAVQFNGAKEVGAKYKALWSHGRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRD
          +     K  GA    L   GRAGRLKEAYEIVNSM FPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFI+CGDFVLLSNVYA R+RWDDVGRVRD
Subjt:  EAVQFNGAKEVGAKYKALWSHGRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRD

Query:  AMRRRDVKKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM
        AMRRRDVKKTPGFSYIEVKGKMHKFVYGDQSH S REIYAKLDEIKFRIKAYGY AETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP Q+
Subjt:  AMRRRDVKKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM

TrEMBL top hitse value%identityAlignment
A0A0A0KB77 DYW_deaminase domain-containing protein7.0e-12277.93Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAK-YKALWSH---
        ++VCNVVIDMYAKCGS+DKAY VFENMRCDKSLITWNTMIMA AMHGDG+KALDLFE+LGRSGMSP+A    A     N  G  E G K + ++      
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAK-YKALWSH---

Query:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                     GRAGRLKEAY+IV+S+ FPNMVLWQTLLGACRTYG+VEMAELASRKLVEMGFI+CGDFVLLSNVYAAR+RWDDVGRVRDAMRRRDVK
Subjt:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM
        KTPGFSYIE+KGKM+KFV GDQSHSSCREIYAKLDEI  RIKAYGY A+T NVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP Q+
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM

A0A1S3C3U7 pentatricopeptide repeat-containing protein At1g341607.7e-12177.24Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAKYKALWSH----
        ++VCNVVIDMYAKCGS+DKAY VFENMRCDKSLITWNTMIMA AMHGDGY+ALDLF++LGRSGMSP+A    A     N  G  E G K   L +     
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAKYKALWSH----

Query:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                     GRAGRLKEAY+IVNS+ FPNMVLWQTLLGACRTYG+VEMAELAS KLVEMGFI+CGDFVLLSNVYAAR+RWDDVGRVRDAMR RDVK
Subjt:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM
        KTPGFSYIE+KGKM++FVYGDQSHSSCREIYAKLDEI  RIKAYGY A+T NVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEG P Q+
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM

A0A5D3C205 Pentatricopeptide repeat-containing protein1.0e-12077.51Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAKYKALWSH----
        ++VCNVVIDMYAKCGS+DKAY VFENMRCDKSLITWNTMIMA AMHGDGY+ALDLF++LGRSGMSP+A    A     N  G  E G K   L +     
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAKYKALWSH----

Query:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                     GRAGRLKEAY+IVNS+ FPNMVLWQTLLGACRTYG+VEMAELAS KLVEMGFI+CGDFVLLSNVYAAR+RWDDVGRVRDAMR RDVK
Subjt:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQ
        KTPGFSYIE+KGKM++FVYGDQSHSSCREIYAKLDEI  RIKAYGY A+T NVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEG P Q
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQ

A0A6J1H8R5 pentatricopeptide repeat-containing protein At1g341601.5e-11976.55Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAK-YKALWSH---
        ++VCNVVIDMYAKCGSVDKAY VFENMRC+KSLITWNTMIMA AMHGDG+KALDLFE+LGRSG+ P+A    A     N  G  E G K + ++      
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFN--GAKEVGAK-YKALWSH---

Query:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                     GRAGRLKEAYEIV+SM FPNMVLWQTLLGACRTYG+V+MAE+ASRKLVEMGFI+CGDFVLLSNVYAAR+RWDDVGRVRDAMRRRDVK
Subjt:  -------------GRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM
        KTPGFSYIEVKG MHKF+YGD+SHSSCREIYAKLDEI FRIKA GY AETGNVLHDI +EDKEN LCYHSEKLAVAFGL+CTEEGTP Q+
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM

A0A6J1JI91 pentatricopeptide repeat-containing protein At1g34160 isoform X14.2e-11975.77Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFNGA-------------------
        ++VCNVVIDMYAKCGSVDKAY VFENMRC+KSLITWNTMIMA AMHGDGYKALDLFE+LGRSG+ P+A    A     N A                   
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFNGA-------------------

Query:  ---KEVGAKYKALWSHGRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRR
           K  G     L   GRAGRLKEAYEIV+SM FPNMVLWQTLLGACRTYG+V+MAE+ASRKLVEMGFI+CGDFVLLSNVYAAR+RWDDVGRVRDAMRRR
Subjt:  ---KEVGAKYKALWSHGRAGRLKEAYEIVNSMHFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRR

Query:  DVKKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM
        DVKKTPGFSYIEVKG MHKF+YGD+SHSSCREIYAKLDEI FRIKA GY AETGNVLHDI +EDKEN LC HSEKLAVAFGL+CTEEGTP Q+
Subjt:  DVKKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQM

SwissProt top hitse value%identityAlignment
A8MQA3 Pentatricopeptide repeat-containing protein At4g210653.3e-5239.16Show/hide
Query:  NVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEEL-GRSGMSP--EARRGWAEAVQFNGAKEVGAKY----------KAL
        NV++D+YA+CG V++A  +F+ M  DK+ ++W ++I+  A++G G +A++LF+ +    G+ P      G   A    G  + G +Y          +  
Subjt:  NVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEEL-GRSGMSP--EARRGWAEAVQFNGAKEVGAKY----------KAL

Query:  WSH--------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK
          H         RAG++K+AYE + SM   PN+V+W+TLLGAC  +G+ ++AE A  +++++   + GD+VLLSN+YA+ +RW DV ++R  M R  VKK
Subjt:  WSH--------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK

Query:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP
         PG S +EV  ++H+F+ GD+SH     IYAKL E+  R+++ GYV +  NV  D+ +E+KENA+ YHSEK+A+AF L  T E +P
Subjt:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP

B8YEK4 Pentatricopeptide repeat-containing protein OGR1, mitochondrial2.3e-6949.65Show/hide
Query:  MKVCNVVIDMYAKCGSVDKAYQVFENMRC-DKSLITWNTMIMASAMHGDGYKALDLFEEL------------------GRSGMSPEARRGWAEAVQFNGA
        ++VCN +IDMY+KCGS+ +A  VF +++  D++L+++N  I A +MHG G  AL LF+E+                    SG+  +  R +         
Subjt:  MKVCNVVIDMYAKCGSVDKAYQVFENMRC-DKSLITWNTMIMASAMHGDGYKALDLFEEL------------------GRSGMSPEARRGWAEAVQFNGA

Query:  KEVGAKYKALWSHGRAGRLKEAYEIVNSMHFP-NMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDV
        K  G     L   GRAGRL EAY+ V SM FP ++VLWQTLLGA + +G VE+AELA+ KL E+G    GD+VLLSNVYA++ RW DVGRVRD MR  DV
Subjt:  KEVGAKYKALWSHGRAGRLKEAYEIVNSMHFP-NMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDV

Query:  KKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEG
        +K PGFSY E+ G MHKF+ GD+ H   +EIY  L++I  RI   GY  ET NVLHDIG+E+K+ ALCYHSEKLA+AFGL  T  G
Subjt:  KKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEG

Q9FX24 Pentatricopeptide repeat-containing protein At1g341601.5e-7650.32Show/hide
Query:  VCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPE--ARRGWAEAVQFNGAKEVGAKY----------KA
        V N  IDMY+KCG VDKAYQVFE     KS++TWNTMI   A+HG+ ++AL++F++L  +G+ P+  +      A +  G  E G             + 
Subjt:  VCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPE--ARRGWAEAVQFNGAKEVGAKY----------KA

Query:  LWSHG-------RAGRLKEAYEIVNSMH-FPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK
        +  +G       RAGRL+EA++I+ SM   P+ VLWQ+LLGA   Y +VEMAE+ASR++ EMG  N GDFVLLSNVYAA+ RW DVGRVRD M  + VKK
Subjt:  LWSHG-------RAGRLKEAYEIVNSMH-FPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK

Query:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQMGRVKTEEE--G
         PG SYIE KG +H+F   D+SH   REIY K+DEI+F+I+  GYVA+TG VLHDIG+E+KENALCYHSEKLAVA+GL   +        RV       G
Subjt:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQMGRVKTEEE--G

Query:  SCEIMEYQIS
         C ++   IS
Subjt:  SCEIMEYQIS

Q9LW32 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial1.8e-5038.3Show/hide
Query:  VIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPE-----------ARRG-------WAEAVQFNGAKEVGAKY
        +IDMY KCG V+ A + F+ M+ +K++ +W  MI    MHG   KAL+LF  +  SG+ P            +  G       W  A++     E G ++
Subjt:  VIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPE-----------ARRG-------WAEAVQFNGAKEVGAKY

Query:  KALWSH--GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKKTPG
                GRAG L++AY+++  M   P+ ++W +LL ACR + NVE+AE++  +L E+   NCG ++LLS++YA   RW DV RVR  M+ R + K PG
Subjt:  KALWSH--GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKKTPG

Query:  FSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGT
        FS +E+ G++H F+ GD+ H    +IY  L E+  ++   GYV+ T +V HD+ +E+KE  L  HSEKLA+AFG+  T  G+
Subjt:  FSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGT

Q9SY02 Pentatricopeptide repeat-containing protein At4g027501.6e-5440.42Show/hide
Query:  VCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWA--EAVQFNGAKEVGAKYKALWSH------
        V N ++ MY KCGS+++A  +F+ M   K +++WNTMI   + HG G  AL  FE + R G+ P+     A   A    G  + G +Y    +       
Subjt:  VCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWA--EAVQFNGAKEVGAKYKALWSH------

Query:  ------------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                    GRAG L++A+ ++ +M F P+  +W TLLGA R +GN E+AE A+ K+  M   N G +VLLSN+YA+  RW DVG++R  MR + VK
Subjt:  ------------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP
        K PG+S+IE++ K H F  GD+ H    EI+A L+E+  R+K  GYV++T  VLHD+ +E+KE  + YHSE+LAVA+G+     G P
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP

Arabidopsis top hitse value%identityAlignment
AT1G34160.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.0e-7750.32Show/hide
Query:  VCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPE--ARRGWAEAVQFNGAKEVGAKY----------KA
        V N  IDMY+KCG VDKAYQVFE     KS++TWNTMI   A+HG+ ++AL++F++L  +G+ P+  +      A +  G  E G             + 
Subjt:  VCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPE--ARRGWAEAVQFNGAKEVGAKY----------KA

Query:  LWSHG-------RAGRLKEAYEIVNSMH-FPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK
        +  +G       RAGRL+EA++I+ SM   P+ VLWQ+LLGA   Y +VEMAE+ASR++ EMG  N GDFVLLSNVYAA+ RW DVGRVRD M  + VKK
Subjt:  LWSHG-------RAGRLKEAYEIVNSMH-FPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK

Query:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQMGRVKTEEE--G
         PG SYIE KG +H+F   D+SH   REIY K+DEI+F+I+  GYVA+TG VLHDIG+E+KENALCYHSEKLAVA+GL   +        RV       G
Subjt:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQMGRVKTEEE--G

Query:  SCEIMEYQIS
         C ++   IS
Subjt:  SCEIMEYQIS

AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.3e-5138.3Show/hide
Query:  VIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPE-----------ARRG-------WAEAVQFNGAKEVGAKY
        +IDMY KCG V+ A + F+ M+ +K++ +W  MI    MHG   KAL+LF  +  SG+ P            +  G       W  A++     E G ++
Subjt:  VIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPE-----------ARRG-------WAEAVQFNGAKEVGAKY

Query:  KALWSH--GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKKTPG
                GRAG L++AY+++  M   P+ ++W +LL ACR + NVE+AE++  +L E+   NCG ++LLS++YA   RW DV RVR  M+ R + K PG
Subjt:  KALWSH--GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKKTPG

Query:  FSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGT
        FS +E+ G++H F+ GD+ H    +IY  L E+  ++   GYV+ T +V HD+ +E+KE  L  HSEKLA+AFG+  T  G+
Subjt:  FSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGT

AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-5540.42Show/hide
Query:  VCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWA--EAVQFNGAKEVGAKYKALWSH------
        V N ++ MY KCGS+++A  +F+ M   K +++WNTMI   + HG G  AL  FE + R G+ P+     A   A    G  + G +Y    +       
Subjt:  VCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWA--EAVQFNGAKEVGAKYKALWSH------

Query:  ------------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK
                    GRAG L++A+ ++ +M F P+  +W TLLGA R +GN E+AE A+ K+  M   N G +VLLSN+YA+  RW DVG++R  MR + VK
Subjt:  ------------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVK

Query:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP
        K PG+S+IE++ K H F  GD+ H    EI+A L+E+  R+K  GYV++T  VLHD+ +E+KE  + YHSE+LAVA+G+     G P
Subjt:  KTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP

AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-5339.16Show/hide
Query:  NVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEEL-GRSGMSP--EARRGWAEAVQFNGAKEVGAKY----------KAL
        NV++D+YA+CG V++A  +F+ M  DK+ ++W ++I+  A++G G +A++LF+ +    G+ P      G   A    G  + G +Y          +  
Subjt:  NVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEEL-GRSGMSP--EARRGWAEAVQFNGAKEVGAKY----------KAL

Query:  WSH--------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK
          H         RAG++K+AYE + SM   PN+V+W+TLLGAC  +G+ ++AE A  +++++   + GD+VLLSN+YA+ +RW DV ++R  M R  VKK
Subjt:  WSH--------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK

Query:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP
         PG S +EV  ++H+F+ GD+SH     IYAKL E+  R+++ GYV +  NV  D+ +E+KENA+ YHSEK+A+AF L  T E +P
Subjt:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP

AT4G21065.2 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-5339.16Show/hide
Query:  NVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEEL-GRSGMSP--EARRGWAEAVQFNGAKEVGAKY----------KAL
        NV++D+YA+CG V++A  +F+ M  DK+ ++W ++I+  A++G G +A++LF+ +    G+ P      G   A    G  + G +Y          +  
Subjt:  NVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEEL-GRSGMSP--EARRGWAEAVQFNGAKEVGAKY----------KAL

Query:  WSH--------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK
          H         RAG++K+AYE + SM   PN+V+W+TLLGAC  +G+ ++AE A  +++++   + GD+VLLSN+YA+ +RW DV ++R  M R  VKK
Subjt:  WSH--------GRAGRLKEAYEIVNSMHF-PNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKK

Query:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP
         PG S +EV  ++H+F+ GD+SH     IYAKL E+  R+++ GYV +  NV  D+ +E+KENA+ YHSEK+A+AF L  T E +P
Subjt:  TPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKFRIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTTTGTAATGTCGTTATTGATATGTATGCTAAATGTGGATCTGTGGATAAAGCTTATCAGGTGTTTGAGAACATGAGGTGTGACAAAAGTTTGATCACTTGGAA
TACAATGATAATGGCGTCTGCAATGCATGGTGATGGATACAAAGCGTTGGATCTTTTTGAAGAGTTGGGTCGATCTGGAATGTCCCCCGAGGCTCGTAGAGGATGGGCTG
AAGCTGTTCAATTCAATGGCGCAAAGGAGGTTGGAGCCAAATATAAAGCATTATGGAGCCATGGTCGAGCAGGGCGTCTCAAAGAAGCTTATGAAATTGTAAATTCAATG
CATTTCCCTAATATGGTACTCTGGCAAACATTGCTTGGTGCTTGCAGGACATATGGGAATGTAGAAATGGCAGAACTGGCATCAAGGAAGCTAGTAGAGATGGGATTTAT
TAACTGTGGTGATTTTGTTTTGTTATCGAATGTGTATGCCGCCCGCAAGAGATGGGATGATGTTGGGAGAGTTAGGGACGCCATGAGAAGAAGGGATGTGAAGAAGACAC
CAGGATTTAGTTACATAGAAGTAAAAGGTAAGATGCACAAATTTGTATATGGTGATCAAAGCCACTCGAGTTGCCGTGAGATCTATGCCAAGCTTGATGAGATCAAGTTC
AGGATCAAAGCCTATGGATATGTAGCTGAAACTGGCAATGTATTGCATGATATTGGAGATGAGGACAAGGAGAATGCACTGTGTTATCACAGTGAGAAGCTCGCTGTGGC
TTTTGGATTGACTTGTACTGAAGAAGGGACCCCAAATCAAATGGGGCGAGTCAAGACCGAGGAAGAAGGCAGCTGTGAAATAATGGAATATCAAATTTCGAACCGAGATC
GAGCTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTTTGTAATGTCGTTATTGATATGTATGCTAAATGTGGATCTGTGGATAAAGCTTATCAGGTGTTTGAGAACATGAGGTGTGACAAAAGTTTGATCACTTGGAA
TACAATGATAATGGCGTCTGCAATGCATGGTGATGGATACAAAGCGTTGGATCTTTTTGAAGAGTTGGGTCGATCTGGAATGTCCCCCGAGGCTCGTAGAGGATGGGCTG
AAGCTGTTCAATTCAATGGCGCAAAGGAGGTTGGAGCCAAATATAAAGCATTATGGAGCCATGGTCGAGCAGGGCGTCTCAAAGAAGCTTATGAAATTGTAAATTCAATG
CATTTCCCTAATATGGTACTCTGGCAAACATTGCTTGGTGCTTGCAGGACATATGGGAATGTAGAAATGGCAGAACTGGCATCAAGGAAGCTAGTAGAGATGGGATTTAT
TAACTGTGGTGATTTTGTTTTGTTATCGAATGTGTATGCCGCCCGCAAGAGATGGGATGATGTTGGGAGAGTTAGGGACGCCATGAGAAGAAGGGATGTGAAGAAGACAC
CAGGATTTAGTTACATAGAAGTAAAAGGTAAGATGCACAAATTTGTATATGGTGATCAAAGCCACTCGAGTTGCCGTGAGATCTATGCCAAGCTTGATGAGATCAAGTTC
AGGATCAAAGCCTATGGATATGTAGCTGAAACTGGCAATGTATTGCATGATATTGGAGATGAGGACAAGGAGAATGCACTGTGTTATCACAGTGAGAAGCTCGCTGTGGC
TTTTGGATTGACTTGTACTGAAGAAGGGACCCCAAATCAAATGGGGCGAGTCAAGACCGAGGAAGAAGGCAGCTGTGAAATAATGGAATATCAAATTTCGAACCGAGATC
GAGCTGTTTAGTAGACTCTCATACAAAAAAATGGCAATGGACAACTACAATGTGTAGTGAATCTGGTATGACCTTATTCATTTCTTACCGTTAGTAGCTTGGCTTATGCT
GGGGTTATAAGAACCCTGCTGCCAGAATTTCATATATATATATATATTAATGTCTATAACTTTTTAACTTCT
Protein sequenceShow/hide protein sequence
MKVCNVVIDMYAKCGSVDKAYQVFENMRCDKSLITWNTMIMASAMHGDGYKALDLFEELGRSGMSPEARRGWAEAVQFNGAKEVGAKYKALWSHGRAGRLKEAYEIVNSM
HFPNMVLWQTLLGACRTYGNVEMAELASRKLVEMGFINCGDFVLLSNVYAARKRWDDVGRVRDAMRRRDVKKTPGFSYIEVKGKMHKFVYGDQSHSSCREIYAKLDEIKF
RIKAYGYVAETGNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPNQMGRVKTEEEGSCEIMEYQISNRDRAV