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Lsi08G006460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G006460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S25
Genome locationchr08:14787296..14793563
RNA-Seq ExpressionLsi08G006460
SyntenyLsi08G006460
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004977 - Ribosomal protein S25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1899829.1 hypothetical protein Lal_00019961 [Lupinus albus]2.4e-4593.52Show/hide
Query:  EAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQ
        EAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ SYDKLLSEAPKFKL+TPSILSDRLRINGSLAR+AI+DLMARGSIRM+SAHSSQQ
Subjt:  EAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQ

Query:  IYTRSTNT
        IYTR+TNT
Subjt:  IYTRSTNT

XP_004291591.1 PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca]1.4e-4595.33Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKL+TPSILSDRLRINGSLARRAIKDLMARGSIRMISAH+SQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

XP_008442240.1 PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]4.8e-4696.26Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

XP_008456601.1 PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]1.1e-4596.26Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

XP_022938725.1 40S ribosomal protein S25-3 [Cucurbita moschata]2.4e-4597.17Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ SYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMIS+HSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTN
        YTR+TN
Subjt:  YTRSTN

TrEMBL top hitse value%identityAlignment
A0A1S3B608 40S ribosomal protein S252.3e-4696.26Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

A0A1S3C4W3 40S ribosomal protein S255.2e-4696.26Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

A0A2N9J628 40S ribosomal protein S258.8e-4694.39Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKL+TPSILSDRLRINGSLARRAI+DLMARGSIRM+S HSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

A0A5D3CKR9 40S ribosomal protein S255.2e-4696.26Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

A0A6J1BYI5 40S ribosomal protein S255.2e-4696.26Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSE PK+KLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

SwissProt top hitse value%identityAlignment
P46301 40S ribosomal protein S251.6e-4486.92Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ +YDKLLSEAPK+KL+TPS+LSDRLRI+GSLAR+AI+DLMARGSIRM+SAH+SQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

Q8GYL5 40S ribosomal protein S25-31.9e-4589.62Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKL+TPSILSDRLRINGSLARRAI++LMA+G+IRM+SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTN
        YTR+T+
Subjt:  YTRSTN

Q9SIK2 40S ribosomal protein S25-22.9e-4689.72Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKL+TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

Q9SIW5 40S ribosomal protein S25-13.0e-4386.67Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKL+SEAPKFKL+TPSILSDRLRINGSLAR+AI+DLM +G+IRM+S HSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRST
         TR+T
Subjt:  YTRST

Q9T029 40S ribosomal protein S25-43.2e-4587.85Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL+TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

Arabidopsis top hitse value%identityAlignment
AT2G21580.1 Ribosomal protein S25 family protein2.1e-4789.72Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKL+TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

AT2G21580.2 Ribosomal protein S25 family protein1.1e-4588.79Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKL+TPSILSDR+RINGSLARRAI++LMA+G IRM+SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

AT4G34555.1 Ribosomal protein S25 family protein1.3e-4689.62Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKL+TPSILSDRLRINGSLARRAI++LMA+G+IRM+SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTN
        YTR+T+
Subjt:  YTRSTN

AT4G39200.1 Ribosomal protein S25 family protein2.3e-4687.85Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL+TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT

AT4G39200.2 Ribosomal protein S25 family protein1.3e-4486.92Show/hide
Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL+TPSILSDR+RINGSLARRAI++LMA+G IRM++AHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQI

Query:  YTRSTNT
        YTR+TNT
Subjt:  YTRSTNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGTAAGGGTAAGCAAAAGGA
GAAGGTGAACAACATGGTTTTGTTTGATCAGGGAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTAGTCACTCCTTCTATTCTTTCTGATAGATTGAGGA
TCAATGGATCACTAGCACGAAGAGCAATTAAGGATTTGATGGCACGAGGTTCCATCAGAATGATCTCAGCTCACTCCAGTCAGCAGATCTACACCAGATCAACCAACACC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGTAAGGGTAAGCAAAAGGA
GAAGGTGAACAACATGGTTTTGTTTGATCAGGGAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTAGTCACTCCTTCTATTCTTTCTGATAGATTGAGGA
TCAATGGATCACTAGCACGAAGAGCAATTAAGGATTTGATGGCACGAGGTTCCATCAGAATGATCTCAGCTCACTCCAGTCAGCAGATCTACACCAGATCAACCAACACC
TAA
Protein sequenceShow/hide protein sequence
MEEAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRSTNT