; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G006550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G006550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscriptional regulator ATRX
Genome locationchr08:14911197..14912671
RNA-Seq ExpressionLsi08G006550
SyntenyLsi08G006550
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140985.1 uncharacterized protein LOC101207733 [Cucumis sativus]1.1e-8894.85Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        TE KVED  AREDV+S ++RRRNEHEEYSGS+IDTSPVLGGSLSWKGRNDSPHTREKYKK SIRSRSSFTS GSSSPKHQLGRSCRQIKRRDTR
Subjt:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

XP_008456583.1 PREDICTED: uncharacterized protein LOC103496496 [Cucumis melo]2.8e-8994.85Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        TE KVED P REDVNS ++RRRNEHEEYSGS+I+TSPVLGGSLSWKGRNDSPHTREKYKK SIRSRSSFTS GSSSPKHQLGRSCRQIKRRDTR
Subjt:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

XP_022134072.1 uncharacterized protein LOC111006434 [Momordica charantia]7.6e-8792.35Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVS+SA+QRADELAKRVAELEEQLK+VSLQRKMAEKATADVL+ILEDNGASDISETLDSNSDHE
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  T--ESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        T  ESKVEDDPAR DVNS+S RRRN HEEYSGSDIDTSPVLGGSLSWKGRNDSPHT EKYKKISIRSRSSF+S GSSSPKH+LGRSCRQIKRRD R
Subjt:  T--ESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

XP_023524578.1 uncharacterized protein LOC111788440 [Cucurbita pepo subsp. pepo]1.6e-8490.31Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPR+VPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKI++LQRKMAEKATADVL+ILEDNG SDISET DSNSDHE
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  T--ESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        T  ESK  +DPAREDVNSSSIRRRNE EEY+GSDIDTSPVLGGSLSWKGR DSP TREKYKKIS+RSRSSF S GSSSPKHQLGRSCRQIKRRD R
Subjt:  T--ESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

XP_038885028.1 uncharacterized protein LOC120075573 [Benincasa hispida]3.4e-8793.81Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPRSVPG EDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISET DSNSD E
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        TESKVED PARE VNSSSI+RRN HEEYSG DIDTSPVLGGSLSWKGRNDSPHTREKYKK SIRSRSSFTS  SSSPKHQLGRSCRQIKR+DTR
Subjt:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

TrEMBL top hitse value%identityAlignment
A0A0A0K8I3 Uncharacterized protein5.1e-8994.85Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        TE KVED  AREDV+S ++RRRNEHEEYSGS+IDTSPVLGGSLSWKGRNDSPHTREKYKK SIRSRSSFTS GSSSPKHQLGRSCRQIKRRDTR
Subjt:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

A0A1S3C3K3 uncharacterized protein LOC1034964961.4e-8994.85Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        TE KVED P REDVNS ++RRRNEHEEYSGS+I+TSPVLGGSLSWKGRNDSPHTREKYKK SIRSRSSFTS GSSSPKHQLGRSCRQIKRRDTR
Subjt:  TESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

A0A5D3CNC8 Uncharacterized protein5.5e-8392.06Show/hide
Query:  QDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHETESKV
        Q++ + RSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHETE KV
Subjt:  QDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHETESKV

Query:  EDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        ED P REDVNS ++RRRNEHEEYSGS+I+TSPVLGGSLSWKGRNDSPHTREKYKK SIRSRSSFTS GSSSPKHQLGRSCRQIKRRDTR
Subjt:  EDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

A0A6J1BXR7 uncharacterized protein LOC1110064343.7e-8792.35Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVS+SA+QRADELAKRVAELEEQLK+VSLQRKMAEKATADVL+ILEDNGASDISETLDSNSDHE
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  T--ESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        T  ESKVEDDPAR DVNS+S RRRN HEEYSGSDIDTSPVLGGSLSWKGRNDSPHT EKYKKISIRSRSSF+S GSSSPKH+LGRSCRQIKRRD R
Subjt:  T--ESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

A0A6J1HA06 uncharacterized protein LOC1114614851.9e-8389.29Show/hide
Query:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE
        MENPDQDQQDPR+VPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKI++LQRKMAEKATADVL+ILEDNG SDISET DSNSDHE
Subjt:  MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHE

Query:  T--ESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
        T  E KV +DPAR+DVNSSSIRRRNE EEY+GSDIDTSPVLGGSLSWKGR DSP TRE YKKIS+RSRSSF S GSSSPKHQLGRSCRQIKRRD R
Subjt:  T--ESKVEDDPAREDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52240.1 unknown protein4.0e-3351.12Show/hide
Query:  EDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHETESKVEDDPAREDVNSS
        +D T++TIEFLRARLL+ER+VSKSAR + D LA +VAELEEQLKIVSLQRK AE+ATADVLAILE+NG +D+S+  DSNSDHE  S+             
Subjt:  EDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHETESKVEDDPAREDVNSS

Query:  SIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKK-ISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR
                         ++ VLG SLSWKGR   P + +K K+  + R    F     SSP+H+ GRSCRQI+R + R
Subjt:  SIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKK-ISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCCTGATCAGGATCAGCAAGATCCGAGGAGTGTTCCTGGGGTGGAGGACACAACTGCAATGACTATTGAGTTTCTTCGTGCTCGACTTCTATCAGAACGATC
TGTTTCAAAAAGTGCAAGACAGAGAGCTGATGAACTAGCAAAACGAGTTGCAGAACTGGAGGAGCAGCTAAAGATCGTGTCTCTTCAAAGAAAGATGGCTGAAAAGGCCA
CAGCAGATGTACTTGCCATTTTAGAAGATAATGGCGCTAGCGATATTTCTGAGACACTTGATTCAAACTCTGACCATGAAACTGAATCAAAAGTTGAGGATGACCCTGCT
AGAGAGGATGTGAACTCCAGTTCAATACGAAGGAGAAATGAACATGAAGAATATTCAGGTTCTGATATCGATACTTCTCCAGTGCTAGGCGGAAGCCTGTCTTGGAAAGG
GCGCAATGATTCACCACATACGCGTGAGAAGTACAAAAAAATTTCTATACGAAGTCGAAGCAGTTTTACTTCGACTGGTTCTTCTTCACCAAAACACCAACTTGGAAGAT
CATGCCGCCAGATAAAACGTAGAGATACAAGGTATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATCCTGATCAGGATCAGCAAGATCCGAGGAGTGTTCCTGGGGTGGAGGACACAACTGCAATGACTATTGAGTTTCTTCGTGCTCGACTTCTATCAGAACGATC
TGTTTCAAAAAGTGCAAGACAGAGAGCTGATGAACTAGCAAAACGAGTTGCAGAACTGGAGGAGCAGCTAAAGATCGTGTCTCTTCAAAGAAAGATGGCTGAAAAGGCCA
CAGCAGATGTACTTGCCATTTTAGAAGATAATGGCGCTAGCGATATTTCTGAGACACTTGATTCAAACTCTGACCATGAAACTGAATCAAAAGTTGAGGATGACCCTGCT
AGAGAGGATGTGAACTCCAGTTCAATACGAAGGAGAAATGAACATGAAGAATATTCAGGTTCTGATATCGATACTTCTCCAGTGCTAGGCGGAAGCCTGTCTTGGAAAGG
GCGCAATGATTCACCACATACGCGTGAGAAGTACAAAAAAATTTCTATACGAAGTCGAAGCAGTTTTACTTCGACTGGTTCTTCTTCACCAAAACACCAACTTGGAAGAT
CATGCCGCCAGATAAAACGTAGAGATACAAGGTATGCTTAA
Protein sequenceShow/hide protein sequence
MENPDQDQQDPRSVPGVEDTTAMTIEFLRARLLSERSVSKSARQRADELAKRVAELEEQLKIVSLQRKMAEKATADVLAILEDNGASDISETLDSNSDHETESKVEDDPA
REDVNSSSIRRRNEHEEYSGSDIDTSPVLGGSLSWKGRNDSPHTREKYKKISIRSRSSFTSTGSSSPKHQLGRSCRQIKRRDTRYA