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Lsi08G006660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G006660
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr08:15002244..15005232
RNA-Seq ExpressionLsi08G006660
SyntenyLsi08G006660
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138679.1 uncharacterized protein LOC101205088 [Cucumis sativus]8.5e-5887.4Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M DNP FV +KED++ PKS  PFPWFSFLPKF FRLP PVNGGKKPP VVVDE +KAD+DAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAV+WQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDDD
        LGGFLILSWAWARWKERRPQRRSNDDD
Subjt:  LGGFLILSWAWARWKERRPQRRSNDDD
XP_008456569.1 PREDICTED: uncharacterized protein LOC103496485 [Cucumis melo]3.2e-5785.5Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M DNP FV MKED++ PKS  PFPWFSFLPKF FRLP PVNGGKK P VVVDE +KAD+DAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAV+WQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDDDSRDT
        LGGFLILSWAWARWKERRPQRRSNDDD  D+
Subjt:  LGGFLILSWAWARWKERRPQRRSNDDDSRDT
XP_023550786.1 uncharacterized protein LOC111808822 isoform X1 [Cucurbita pepo subsp. pepo]1.2e-5178.52Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M++ P  +GMKE D++PK  FPF WFSFLPKF  RLPLP+NGGKKPPA V+DEG K DDDAQKPEFVRFPKA L V SVE EADVSGKTSNPAVIWQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDD----DSRDT
        LGGFLILSWAWARWKERRP+RRS+DD    DSRDT
Subjt:  LGGFLILSWAWARWKERRPQRRSNDD----DSRDT
XP_023550789.1 uncharacterized protein LOC111808822 isoform X3 [Cucurbita pepo subsp. pepo]1.2e-5178.52Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M++ P  +GMKE D++PK  FPF WFSFLPKF  RLPLP+NGGKKPPA V+DEG K DDDAQKPEFVRFPKA L V SVE EADVSGKTSNPAVIWQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDD----DSRDT
        LGGFLILSWAWARWKERRP+RRS+DD    DSRDT
Subjt:  LGGFLILSWAWARWKERRPQRRSNDD----DSRDT
XP_038886165.1 uncharacterized protein LOC120076415 [Benincasa hispida]6.1e-6492.13Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        MA+NP F+GMKED+D+PKSPFPFPWFSFLPKF FRLP P+NGGKKPPAVVVDEG+KADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDDD
        LGGFLILSWAWARWKERRPQRRSNDD+
Subjt:  LGGFLILSWAWARWKERRPQRRSNDDD
TrEMBL top hitse value%identityAlignment
A0A0A0LSR5 Uncharacterized protein4.1e-5887.4Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M DNP FV +KED++ PKS  PFPWFSFLPKF FRLP PVNGGKKPP VVVDE +KAD+DAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAV+WQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDDD
        LGGFLILSWAWARWKERRPQRRSNDDD
Subjt:  LGGFLILSWAWARWKERRPQRRSNDDD
A0A1S3C3J3 uncharacterized protein LOC1034964851.6e-5785.5Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M DNP FV MKED++ PKS  PFPWFSFLPKF FRLP PVNGGKK P VVVDE +KAD+DAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAV+WQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDDDSRDT
        LGGFLILSWAWARWKERRPQRRSNDDD  D+
Subjt:  LGGFLILSWAWARWKERRPQRRSNDDDSRDT
A0A5D3CKR2 Uncharacterized protein1.6e-5785.5Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M DNP FV MKED++ PKS  PFPWFSFLPKF FRLP PVNGGKK P VVVDE +KAD+DAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAV+WQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDDDSRDT
        LGGFLILSWAWARWKERRPQRRSNDDD  D+
Subjt:  LGGFLILSWAWARWKERRPQRRSNDDDSRDT
A0A6J1FFF8 uncharacterized protein LOC1114449951.4e-5077.78Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M++NP  +GMKE D +PK  FPF WFSFLPKF  RLPLP+NGGKKPPA V+DE  K DD AQKPEFVRFPKA L V SVE EADVSGKTSNPAVIWQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDD----DSRDT
        LGGFLILSWAWARWKERRP+RRS+DD    DSRDT
Subjt:  LGGFLILSWAWARWKERRPQRRSNDD----DSRDT
A0A6J1JVP7 uncharacterized protein LOC1114892981.1e-5076.3Show/hide
Query:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA
        M+++P  +G+KE +++PK  FPF WFSFLPKF  RLPLP+NGGKKPPA V+DEG K D+DAQKPEFVRFPKA L V SVE EADVSGKTSNPAVIWQVYA
Subjt:  MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYA

Query:  LGGFLILSWAWARWKERRPQRRSNDD----DSRDT
        LGGFLILSWAWARWKERRP+RRS+DD    DSRDT
Subjt:  LGGFLILSWAWARWKERRPQRRSNDD----DSRDT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52230.1 unknown protein1.2e-1242.42Show/hide
Query:  KPPAVVVDEGQKADDDAQKP-----EFVRF----PKAELPVASVEAEADVSGKTSNPAVIWQVYALGGFLILSWAWARWKERR----PQRRSNDDDSRD
        KPP   +D         ++P     E V F    PK+  P+   EAE   SG+TSN  ++WQVYALGGFL+L WAWARW ER      +  + DDD +D
Subjt:  KPPAVVVDEGQKADDDAQKP-----EFVRF----PKAELPVASVEAEADVSGKTSNPAVIWQVYALGGFLILSWAWARWKERR----PQRRSNDDDSRD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACAACCCAAATTTTGTTGGCATGAAAGAAGACGATGACACCCCAAAATCCCCTTTCCCCTTCCCTTGGTTTTCTTTTCTTCCCAAGTTCCACTTCCGATTGCC
TCTTCCGGTCAACGGCGGGAAGAAACCGCCGGCTGTGGTGGTTGATGAAGGCCAAAAGGCCGATGACGATGCTCAGAAGCCGGAGTTCGTGAGGTTTCCTAAAGCAGAGT
TGCCCGTTGCGTCGGTGGAGGCTGAAGCTGATGTCTCCGGCAAGACTTCCAATCCGGCGGTCATCTGGCAGGTATATGCCCTGGGTGGGTTTCTAATATTGAGTTGGGCA
TGGGCAAGATGGAAGGAGAGAAGGCCCCAAAGACGTTCAAATGATGACGACTCCAGGGATACTTAG
mRNA sequenceShow/hide mRNA sequence
TGCAATTAAAACTATTTAATTTAAAACAATTCTTAAGTTAGGGATTTGGGTTTGAAAATGACAATTGTTTTGGAAGAAAAGAAATCGTTGTATTATCCGCCGCTTCAACA
AAGACAATGACTACTACCAGTATTTGTAGTTGATTTGATCGCACTTTCTTTTTTCTCTTTCAGATTACAACAAAAATGGCAGACAACCCAAATTTTGTTGGCATGAAAGA
AGACGATGACACCCCAAAATCCCCTTTCCCCTTCCCTTGGTTTTCTTTTCTTCCCAAGTTCCACTTCCGATTGCCTCTTCCGGTCAACGGCGGGAAGAAACCGCCGGCTG
TGGTGGTTGATGAAGGCCAAAAGGCCGATGACGATGCTCAGAAGCCGGAGTTCGTGAGGTTTCCTAAAGCAGAGTTGCCCGTTGCGTCGGTGGAGGCTGAAGCTGATGTC
TCCGGCAAGACTTCCAATCCGGCGGTCATCTGGCAGGTATATGCCCTGGGTGGGTTTCTAATATTGAGTTGGGCATGGGCAAGATGGAAGGAGAGAAGGCCCCAAAGACG
TTCAAATGATGACGACTCCAGGGATACTTAGTTTTGTGTTTGTGTTTTGAACAGCCCTTAATAAATGTTGAAGTTACATTATTAGTGCTAGAATCAATCTTGAGTTTATA
TCGGTTATTTGTAATTTCGAGTTAAATCAGTCATTTCCTAACCCTTTGTCAATCCTTGAAAATGATCTTATAGTATGAAATTAAACCTGTCTTCATGAGGGTTCTCTAAT
GTATTGGTGCAAAATCAACAACTTTTAATGTTAATAAGAGGCTTCCTGCTTGCAAACAGTAATAAAT
Protein sequenceShow/hide protein sequence
MADNPNFVGMKEDDDTPKSPFPFPWFSFLPKFHFRLPLPVNGGKKPPAVVVDEGQKADDDAQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYALGGFLILSWA
WARWKERRPQRRSNDDDSRDT