CuGenDBv2

Gene ID	Lsi08G007040
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Sorting and assembly machinery component 50-like protein
Genome location	chr08:15337676..15354567
RNA-Seq Expression	Lsi08G007040
Synteny	Lsi08G007040
Gene Ontology terms	GO:0045040 - protein insertion into mitochondrial outer membrane (biological process) GO:0001401 - SAM complex (cellular component) GO:0009527 - plastid outer membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR000184 - Bacterial surface antigen (D15) IPR039910 - Surface antigen D15-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036493.1 sorting and assembly machinery component 50-like protein [Cucumis melo var. makuwa]

7.3e-118

98.09

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Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +Q+GGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NK ENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

XP_004140074.1 sorting and assembly machinery component 50 homolog [Cucumis sativus]

1.6e-117

97.61

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Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +Q+GGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NK +NNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

XP_008456518.1 PREDICTED: LOW QUALITY PROTEIN: sorting and assembly machinery component 50 homolog [Cucumis melo]

2.8e-117

97.61

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Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +Q+GGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGV FPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NK ENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

XP_023550898.1 sorting and assembly machinery component 50 homolog B-like [Cucurbita pepo subsp. pepo]

8.0e-117

96.65

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Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +QIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVV PWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NKGE+ND+LGRDFVGGDLAVTAFADLSFDLP+RWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVGVG+VVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

XP_038885406.1 sorting and assembly machinery component 50 homolog [Benincasa hispida]

1.4e-116

96.65

Show/hide

Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +QIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVV PWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NKGEN+DSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVG G+VVPTRLFRLEGNFYYILKQQ+
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE64 Uncharacterized protein

7.8e-118

97.61

Show/hide

Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +Q+GGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NK +NNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

A0A1S3C310 LOW QUALITY PROTEIN: sorting and assembly machinery component 50 homolog

1.3e-117

97.61

Show/hide

Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +Q+GGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGV FPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NK ENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

A0A5A7T0T1 Sorting and assembly machinery component 50-like protein

3.5e-118

98.09

Show/hide

Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +Q+GGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NK ENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

A0A6J1FH45 sorting and assembly machinery component 50 homolog B-like

1.9e-116

96.17

Show/hide

Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +QIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVV PWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NKGE+ND+LGRDFVGGDLAVTAFADLSFDLP+RWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKF ETFRTSVGVG+VVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

A0A6J1K1Q1 sorting and assembly machinery component 50 homolog B-like

1.1e-116

96.17

Show/hide

Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +QIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVV PWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
        NKG++ND+LGRDFVGGDLAVTAFADLSFDLP+RWLREHGIHGHIFAGAGNLAKLTENEFRSFS QKFMETFRTSVGVG+VVPTRLFRLEGNFYYILKQQE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGFR
        HDRGKTGFR
Subjt:  HDRGKTGFR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G11070.1 Outer membrane OMP85 family protein

1.9e-84

68.12

Show/hide

Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +QIGGLAPD RSLRF++QE DLRYA+PFGF  AA+NFGVS GV FPWG+G+ N+PSS+PERFFLGG+ SPVC++ GP+ +WGFKTRG+GP+EP+R     
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
         KG++     RDFVGGD AVTAFADLSFDLP+RWLRE GIHGH+FA AGN+AKL+ENEFR+F++ KF+ETFRTSVG G+V+PT LFR+E N+ +ILK+QE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTG
        HD+ ++G
Subjt:  HDRGKTG

AT5G05520.1 Outer membrane OMP85 family protein

5.1e-85

64.9

Show/hide

Query:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE
        +QIGGLAPD R+LRF+RQE DLRYA+P GF RAA+NFG++ G+ FPWG+G+ ++ S +PERFFLGG+ SPVC++GGP+ +WGFKTRG+GP EPRREV+D+
Subjt:  TQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDE

Query:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE
           E+ D+  RDFVGGD+AVTAFADLSFD P++W R+ GIHGH+FA AGN+A+L+EN++R+F++ K +ETFR+SVG G+VVPT LFR+E N+ +ILK+QE
Subjt:  NKGENNDSLGRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQE

Query:  HDRGKTGF
        HDR K+GF
Subjt:  HDRGKTGF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTCAAATTGGTGGTCTTGCACCTGATCACCGGAGCTTGCGATTTGTCCGCCAGGAATTTGATCTACGGTATGCCATTCCTTTCGGCTTTGATCGCGCTGCCATGAA
CTTTGGAGTTTCTGCCGGAGTTGTTTTTCCTTGGGGAAATGGGTTTTTGAACAAGCCATCATCTCTTCCAGAACGCTTTTTCTTAGGTGGTGATTTCTCTCCCGTATGCA
CCATTGGAGGCCCCACAACTGTATGGGGATTTAAGACGCGTGGAATGGGACCAACTGAGCCAAGGCGCGAAGTGAGAGATGAAAATAAGGGTGAAAACAATGATTCTCTT
GGAAGGGATTTTGTTGGAGGAGATCTTGCAGTCACTGCTTTTGCAGATCTTTCATTTGACCTCCCGATTCGCTGGTTAAGAGAACATGGAATCCACGGACACATATTTGC
TGGTGCAGGCAACCTTGCAAAGTTGACAGAGAATGAGTTTCGCAGTTTCTCTTCTCAGAAGTTCATGGAAACATTCCGTACCTCTGTAGGAGTTGGAGTTGTGGTTCCGA
CAAGACTCTTCCGTCTAGAGGGGAACTTCTACTACATATTGAAGCAACAAGAGCATGATCGTGGAAAAACTGGCTTTCGAGAGAGATTGAACCCTGACAATTCCAATTCC
AGTACCCTGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTQIGGLAPDHRSLRFVRQEFDLRYAIPFGFDRAAMNFGVSAGVVFPWGNGFLNKPSSLPERFFLGGDFSPVCTIGGPTTVWGFKTRGMGPTEPRREVRDENKGENNDSL
GRDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGAGNLAKLTENEFRSFSSQKFMETFRTSVGVGVVVPTRLFRLEGNFYYILKQQEHDRGKTGFRERLNPDNSNS
STL

Lsi08G007040 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome