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Lsi08G007340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G007340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAP2-like ethylene-responsive transcription factor
Genome locationchr08:15688279..15690249
RNA-Seq ExpressionLsi08G007340
SyntenyLsi08G007340
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001471 - AP2/ERF domain
IPR036955 - AP2/ERF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036452.1 AP2-like ethylene-responsive transcription factor [Cucumis melo var. makuwa]1.7e-2277.63Show/hide
Query:  AIKSIKRRRRSASSSSTVG-GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKE
        A+K +KRRRR+ASSSSTVG GGD QPHKSM + ST TKRSSKFRGVSRHRWTGRFEAHLWDKGSWNP + R++ K+
Subjt:  AIKSIKRRRRSASSSSTVG-GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKE

KAE8647297.1 hypothetical protein Csa_004348 [Cucumis sativus]1.6e-2072.73Show/hide
Query:  AIKSIKRRRRSASSSSTV--GGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKE
        A+K +KRRRR+ASSSS    GGGD QPHK M + ST TKRSSKFRGVSRHRWTGRFEAHLWDKGSWNP + R++ K+
Subjt:  AIKSIKRRRRSASSSSTV--GGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKE

XP_008456799.1 PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 [Cucumis melo]7.8e-2374.68Show/hide
Query:  AIKSIKRRRRSASSSSTVG-GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM
        A+K +KRRRR+ASSSSTVG GGD QPHKSM + ST TKRSSKFRGVSRHRWTGRFEAHLWDKGSWNP + R++ K++ +
Subjt:  AIKSIKRRRRSASSSSTVG-GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM

XP_031742891.1 AP2-like ethylene-responsive transcription factor At1g79700 [Cucumis sativus]7.3e-2170Show/hide
Query:  AIKSIKRRRRSASSSSTV--GGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM
        A+K +KRRRR+ASSSS    GGGD QPHK M + ST TKRSSKFRGVSRHRWTGRFEAHLWDKGSWNP + R++ K++ +
Subjt:  AIKSIKRRRRSASSSSTV--GGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM

XP_038885870.1 AP2-like ethylene-responsive transcription factor At1g16060 [Benincasa hispida]1.3e-2578.48Show/hide
Query:  MAIKSIKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM
        MA+K IKRRRR ASSSSTVGGGD QPHKSM DHST TKRSSKFRGVSRHRWTGRFEAHLWDKG WNP + R++ K++ +
Subjt:  MAIKSIKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM

TrEMBL top hitse value%identityAlignment
A0A0A0KJ57 Uncharacterized protein7.9e-2172.73Show/hide
Query:  AIKSIKRRRRSASSSSTV--GGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKE
        A+K +KRRRR+ASSSS    GGGD QPHK M + ST TKRSSKFRGVSRHRWTGRFEAHLWDKGSWNP + R++ K+
Subjt:  AIKSIKRRRRSASSSSTV--GGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKE

A0A1S3C431 AP2-like ethylene-responsive transcription factor At1g797003.8e-2374.68Show/hide
Query:  AIKSIKRRRRSASSSSTVG-GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM
        A+K +KRRRR+ASSSSTVG GGD QPHKSM + ST TKRSSKFRGVSRHRWTGRFEAHLWDKGSWNP + R++ K++ +
Subjt:  AIKSIKRRRRSASSSSTVG-GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM

A0A5A7SYZ9 AP2-like ethylene-responsive transcription factor8.5e-2377.63Show/hide
Query:  AIKSIKRRRRSASSSSTVG-GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKE
        A+K +KRRRR+ASSSSTVG GGD QPHKSM + ST TKRSSKFRGVSRHRWTGRFEAHLWDKGSWNP + R++ K+
Subjt:  AIKSIKRRRRSASSSSTVG-GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKE

A0A6J1DD61 ethylene-responsive transcription factor WRI1-like4.8e-1863.86Show/hide
Query:  MAIKSIKRRRRSASSSSTVGG----GDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM
        MA+K  KRRRRS SSS+ + G    GD   HKS  D ST TKRSS+FRGVSRHRWTGRFEAHLWDKGSWNP + R++ K++ +
Subjt:  MAIKSIKRRRRSASSSSTVGG----GDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM

A0A6J1G4W8 ethylene-responsive transcription factor WRI1-like3.4e-1662.82Show/hide
Query:  AIKSIKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM
        A+K I+RRRRS         G  QP KS AD ST TKRSS+FRGVSRHRWTGRFEAHLWDKGSWNP + R++ K++ +
Subjt:  AIKSIKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMM

SwissProt top hitse value%identityAlignment
A0JPZ8 AP2-like ethylene-responsive transcription factor At1g797005.7e-0847.14Show/hide
Query:  IKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWN---PHKGRR
        I  +  SAS S+++     +  KS   ++ + +RSS +RGV+RHRWTGR+EAHLWDK SWN     KGR+
Subjt:  IKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWN---PHKGRR

Q6X5Y6 Ethylene-responsive transcription factor WRI14.3e-0851.52Show/hide
Query:  KRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR
        KR +R+  SS +   GD + H   +  S  T+RSS +RGV+RHRWTGRFEAHLWDK SWN  + ++
Subjt:  KRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR

Q8GWK2 AP2-like ethylene-responsive transcription factor At2g417101.9e-0851.92Show/hide
Query:  GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR
        G  A+   S     T  KRSS +RGV+RHRWTGR+EAHLWDK +WN ++ ++
Subjt:  GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR

Q94AN4 AP2-like ethylene-responsive transcription factor At1g160602.2e-0768.42Show/hide
Query:  KRSSKFRGVSRHRWTGRFEAHLWDKGSWN---PHKGRR
        +RSS  RGV+RHRWTGR+EAHLWDK SWN     KGR+
Subjt:  KRSSKFRGVSRHRWTGRFEAHLWDKGSWN---PHKGRR

X5HYT8 AP2-like ethylene-responsive transcription factor SMOS12.5e-0865.71Show/hide
Query:  KRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR
        KRSS +RGV+RHRWTGR+EAHLWDK +WN ++ ++
Subjt:  KRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR

Arabidopsis top hitse value%identityAlignment
AT1G79700.1 Integrase-type DNA-binding superfamily protein4.0e-0947.14Show/hide
Query:  IKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWN---PHKGRR
        I  +  SAS S+++     +  KS   ++ + +RSS +RGV+RHRWTGR+EAHLWDK SWN     KGR+
Subjt:  IKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWN---PHKGRR

AT2G41710.1 Integrase-type DNA-binding superfamily protein1.4e-0951.92Show/hide
Query:  GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR
        G  A+   S     T  KRSS +RGV+RHRWTGR+EAHLWDK +WN ++ ++
Subjt:  GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR

AT2G41710.2 Integrase-type DNA-binding superfamily protein1.4e-0951.92Show/hide
Query:  GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR
        G  A+   S     T  KRSS +RGV+RHRWTGR+EAHLWDK +WN ++ ++
Subjt:  GGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR

AT3G54320.1 Integrase-type DNA-binding superfamily protein3.1e-0951.52Show/hide
Query:  KRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR
        KR +R+  SS +   GD + H   +  S  T+RSS +RGV+RHRWTGRFEAHLWDK SWN  + ++
Subjt:  KRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR

AT3G54320.3 Integrase-type DNA-binding superfamily protein3.1e-0951.52Show/hide
Query:  KRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR
        KR +R+  SS +   GD + H   +  S  T+RSS +RGV+RHRWTGRFEAHLWDK SWN  + ++
Subjt:  KRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATCAAGAGCATCAAGAGACGGCGGAGAAGTGCTTCTTCTTCCTCCACTGTTGGTGGTGGAGATGCTCAACCACATAAGTCAATGGCAGATCATTCCACTGTCAC
AAAAAGAAGCTCCAAGTTTCGTGGAGTTAGCAGACATCGATGGACGGGACGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCACACAAAGGAAGAAGGGAAA
ACAAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGAGCATATGACT
mRNA sequenceShow/hide mRNA sequence
TTCTAAATTCAGAGTTGTGCTCTCTCAAAAGTGATTCCATGGCCATCAAGAGCATCAAGAGACGGCGGAGAAGTGCTTCTTCTTCCTCCACTGTTGGTGGTGGAGATGCT
CAACCACATAAGTCAATGGCAGATCATTCCACTGTCACAAAAAGAAGCTCCAAGTTTCGTGGAGTTAGCAGACATCGATGGACGGGACGATTTGAAGCTCATTTATGGGA
CAAAGGGTCTTGGAATCCACACAAAGGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGAGCATATGACT
Protein sequenceShow/hide protein sequence
MAIKSIKRRRRSASSSSTVGGGDAQPHKSMADHSTVTKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPHKGRRENKELMMKKNQLLEHMT