; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G007390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G007390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor PRE6-like
Genome locationchr08:15738706..15740297
RNA-Seq ExpressionLsi08G007390
SyntenyLsi08G007390
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]6.6e-3690.62Show/hide
Query:  MSTRRSSRSRNSSGA-PLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNS+ A PLISDDQI+DLVSKLQRLIPELRNPRASHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEA IIRSLFM
Subjt:  MSTRRSSRSRNSSGA-PLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]1.7e-3691.67Show/hide
Query:  MSTRRSSRSRNSS-GAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNSS  +PLISDDQI+DLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLF+
Subjt:  MSTRRSSRSRNSS-GAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]3.6e-3492.63Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNSSGA  ISDDQISDLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLFM
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]8.1e-3491.58Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRN+SGA  ISDDQISDLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLFM
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]2.6e-4098.95Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein3.2e-3690.62Show/hide
Query:  MSTRRSSRSRNSSGA-PLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNS+ A PLISDDQI+DLVSKLQRLIPELRNPRASHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEA IIRSLFM
Subjt:  MSTRRSSRSRNSSGA-PLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

A0A1S3CPL2 transcription factor PRE6-like8.4e-3791.67Show/hide
Query:  MSTRRSSRSRNSS-GAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNSS  +PLISDDQI+DLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLF+
Subjt:  MSTRRSSRSRNSS-GAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

A0A5D3BPI2 Transcription factor PRE6-like8.4e-3791.67Show/hide
Query:  MSTRRSSRSRNSS-GAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNSS  +PLISDDQI+DLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLF+
Subjt:  MSTRRSSRSRNSS-GAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

A0A6J1G4C0 transcription factor PRE6-like1.8e-3492.63Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNSSGA  ISDDQISDLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLFM
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

A0A6J1KGK3 transcription factor PRE6-like1.8e-3492.63Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        MS+RRSSRSRNSSGA  ISDDQISDLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLFM
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

SwissProt top hitse value%identityAlignment
F4JCN9 Transcription factor PRE41.3e-2370.33Show/hide
Query:  RSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        R SRSR  +GA +I+D+QI+DLV +L RL+PEL N R S KVSAS+VLQETC+YIRNL +EVDDLSERLSQLL ST  DSA+AA+IRSL M
Subjt:  RSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

Q8GW32 Transcription factor PRE64.3e-3082.8Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSL
        MS+RRSSRSR  SG+  ISDDQISDLVSKLQ LIPELR  R S KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLAST+++SAEAAIIRSL
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSL

Q9CA64 Transcription factor PRE31.1e-2570.97Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSL
        MS RR SRSR SSG   IS+DQI+DL+ KLQ+L+PELR+ R S KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA+  +D+A+AA+IRSL
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSL

Q9FLE9 Transcription factor PRE12.4e-2570.45Show/hide
Query:  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        RSR SS AP ISD+Q+ DLVSKL++++PE+   R S K SASKVLQETCNYIRNL+REVD+LSERLSQLL S + DS EAA+IRSL M
Subjt:  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

Q9LJX1 Transcription factor PRE59.3e-2569.32Show/hide
Query:  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        RSR +S A  ISDDQ+ DLVSKL++ +PE+   R S KVSASKVLQETCNYIR LHREVD+LS+RLSQLL S + DS EAA+IRSL M
Subjt:  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.1e-3182.8Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSL
        MS+RRSSRSR  SG+  ISDDQISDLVSKLQ LIPELR  R S KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLAST+++SAEAAIIRSL
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 17.8e-2770.97Show/hide
Query:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSL
        MS RR SRSR SSG   IS+DQI+DL+ KLQ+L+PELR+ R S KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA+  +D+A+AA+IRSL
Subjt:  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.6e-2669.32Show/hide
Query:  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        RSR +S A  ISDDQ+ DLVSKL++ +PE+   R S KVSASKVLQETCNYIR LHREVD+LS+RLSQLL S + DS EAA+IRSL M
Subjt:  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

AT3G47710.1 BANQUO 39.5e-2570.33Show/hide
Query:  RSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        R SRSR  +GA +I+D+QI+DLV +L RL+PEL N R S KVSAS+VLQETC+YIRNL +EVDDLSERLSQLL ST  DSA+AA+IRSL M
Subjt:  RSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.7e-2670.45Show/hide
Query:  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM
        RSR SS AP ISD+Q+ DLVSKL++++PE+   R S K SASKVLQETCNYIRNL+REVD+LSERLSQLL S + DS EAA+IRSL M
Subjt:  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGACGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGCT
TCGTAATCCCCGCGCTTCCCACAAGGTGTCGGCTTCGAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAGGTGGATGATTTAAGTGAGCGATTGT
CGCAGCTTTTAGCATCAACAGAAAATGACAGTGCCGAGGCTGCGATTATTAGGAGTTTATTCATGTAA
mRNA sequenceShow/hide mRNA sequence
AAATGAGGAAAGCCTTCTCTCTCTAATTCTCTCTCTCCTTATCTCTCTGTCTCTGCCTAAAACACTATATATACAGCTTCTCCCCATCATCTCTCTCCCATCATCTCCAT
AACGTCGTCGTTTTCGCTCTCTCTCTCTCTCCTTTTTCATCCCTAAAACTTAATTCCAGCCTTTTTCAAAATTTAAAATATTACAACATGTCTACCAGAAGATCCTCTCG
CTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGACGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGCTTCGTAATCCCCGCGCTTCCCACA
AGGTGTCGGCTTCGAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAGGTGGATGATTTAAGTGAGCGATTGTCGCAGCTTTTAGCATCAACAGAA
AATGACAGTGCCGAGGCTGCGATTATTAGGAGTTTATTCATGTAAAACCTATAATTTATCTACCACGATTTCCCTAAGCGTTACGACGTCGTTCCTTTCTTATTTTTCAT
TTTCTCTCTTTATATATATTTATATATAAATATATATGTATAATAGTTAAAGTATTTAGCTAGGGCTTTTTTGGCCGATGTATTAGGCCAGTACACAGAAGGGTGCTATA
TTTTATATATATAACACCTCTTTTGAGCAGAGTTTGTAGTACTTTGACTTTTATAATATTCTATGAACCCAAGT
Protein sequenceShow/hide protein sequence
MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM