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Lsi08G007570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G007570
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncentromere protein V-like
Genome locationchr08:15911195..15913339
RNA-Seq ExpressionLsi08G007570
SyntenyLsi08G007570
Gene Ontology termsGO:0016846 - carbon-sulfur lyase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006913 - CENP-V/GFA domain
IPR011057 - Mss4-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008464790.1 PREDICTED: centromere protein V isoform X2 [Cucumis melo]2.7e-7593.53Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTR
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK +  R
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTR

XP_008464793.1 PREDICTED: centromere protein V isoform X5 [Cucumis melo]7.9e-7593.57Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTRK
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK  NT++
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTRK

XP_016903270.1 PREDICTED: centromere protein V isoform X1 [Cucumis melo]7.9e-7593.48Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK + +
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT

XP_016903271.1 PREDICTED: centromere protein V isoform X6 [Cucumis melo]7.9e-7593.48Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK + +
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT

XP_038884393.1 centromere protein V [Benincasa hispida]2.0e-7897.12Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRW+VEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTR
        CVDPGTLTHVEIR+FDGSNWEASYDHTGIASFSKF+NTR
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTR

TrEMBL top hitse value%identityAlignment
A0A1S3CMD8 centromere protein V isoform X21.3e-7593.53Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTR
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK +  R
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTR

A0A1S3CMF5 centromere protein V isoform X53.8e-7593.57Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTRK
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK  NT++
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTRK

A0A1S4E4W3 centromere protein V isoform X63.8e-7593.48Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK + +
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT

A0A1S4E5L6 centromere protein V isoform X13.8e-7593.48Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK + +
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT

A0A5D3CJK9 Centromere protein V isoform X13.8e-7593.48Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNF+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFK
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT
        CVDPGTLTHVE+RQFDGSNWEASYDHTGIASFSK + +
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNT

SwissProt top hitse value%identityAlignment
A0A0U1RR11 Centromere protein V-like protein 11.5e-2040.16Show/hide
Query:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP
        LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + TY   +H A H+FC  CG+ SF+   S+P    V   C+D 
Subjt:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP

Query:  GTLTHVEIRQFDGSN--WEASYDHTGI
        GT+  V I +  G +   EA+ +H  I
Subjt:  GTLTHVEIRQFDGSN--WEASYDHTGI

A0A0U1RRI6 Centromere protein V-like protein 31.5e-2040.16Show/hide
Query:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP
        LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + TY   +H A H+FC  CG+ SF+   S+P    V   C+D 
Subjt:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP

Query:  GTLTHVEIRQFDGSN--WEASYDHTGI
        GT+  V I +  G +   EA+ +H  I
Subjt:  GTLTHVEIRQFDGSN--WEASYDHTGI

P0DPI3 Centromere protein V-like protein 21.5e-2040.16Show/hide
Query:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP
        LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + TY   +H A H+FC  CG+ SF+   S+P    V   C+D 
Subjt:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP

Query:  GTLTHVEIRQFDGSN--WEASYDHTGI
        GT+  V I +  G +   EA+ +H  I
Subjt:  GTLTHVEIRQFDGSN--WEASYDHTGI

Q7Z7K6 Centromere protein V5.9e-3351.15Show/hide
Query:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP
        LV H GGCHC  VR+ V A A +  +DCNCS C  + N HFIVP  RFKLL   +  I+TYTF +H A+HTFCK CG+ SFY PRSNP G  +   C+D 
Subjt:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP

Query:  GTLTHVEIRQFDGSNWE-ASYDHTGIASFSK
        GT+  +   +F+GS+WE A  +H  I + SK
Subjt:  GTLTHVEIRQFDGSNWE-ASYDHTGIASFSK

Q9CXS4 Centromere protein V2.0e-3351.91Show/hide
Query:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP
        LV H GGCHC  VR+ V A A +  +DCNCS C  + N HFIVP  RFKLL  + + I+TYTF +H A+HTFCK CG+ SFY PRSNP G  +   C+D 
Subjt:  LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDP

Query:  GTLTHVEIRQFDGSNWE-ASYDHTGIASFSK
        GT+  V   +F+GS+WE A  +H  I + SK
Subjt:  GTLTHVEIRQFDGSNWE-ASYDHTGIASFSK

Arabidopsis top hitse value%identityAlignment
AT5G16940.1 carbon-sulfur lyases7.1e-5870.15Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        M SEL+ H GGCHC K++WRV+A  SV+AW CNCS+C MR N HFIVP   F+LL DS +FI+TYTFG+HTAKHTFCKVCGITSFY PRSNPDGVAVT K
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSK
        CV  GTL H+E++ +DG NWE S+  TGIASFSK
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSK

AT5G16940.2 carbon-sulfur lyases7.1e-5870.15Show/hide
Query:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK
        M SEL+ H GGCHC K++WRV+A  SV+AW CNCS+C MR N HFIVP   F+LL DS +FI+TYTFG+HTAKHTFCKVCGITSFY PRSNPDGVAVT K
Subjt:  MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSK
        CV  GTL H+E++ +DG NWE S+  TGIASFSK
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTGAGTTGGTTGTGCATAATGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTTGAAGCACCTGCGAGTGTTGTAGCTTGGGATTGCAACTGTTCTAATTG
CTTCATGAGGGCCAATACACATTTCATCGTACCTTTGGAACGGTTCAAGCTTTTAGGAGATTCTAGCAACTTTATTTCTACCTATACCTTTGGTTCTCACACTGCCAAAC
ATACCTTCTGCAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAATCCAGATGGAGTTGCAGTTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTT
GAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGATCACACAGGCATTGCTTCATTCTCTAAGTTTGACAACACAAGAAAACGCGTGGTTTCACCTATTCT
AGAACGCGAATTTATAGCCCTTGCATTCAGTCTTGTAACAAATATATTGCTAGACAATAAAATTGAGGTATTCTTGTATACTGCTAAGTTGTGTTCTCCTTTATGCAATT
TTAACTTAGTTTTGTATGTTGTTCAAACATTCATATTTTGTGAATATAGTGGGATGAGAGAATTTGAGCTAATGACCTCTATTAACTTGACAATTGGTGAGTTATGGGGC
GAATGCCTCCTAGGTGCAAATATACATCGTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTGAGTTGGTTGTGCATAATGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTTGAAGCACCTGCGAGTGTTGTAGCTTGGGATTGCAACTGTTCTAATTG
CTTCATGAGGGCCAATACACATTTCATCGTACCTTTGGAACGGTTCAAGCTTTTAGGAGATTCTAGCAACTTTATTTCTACCTATACCTTTGGTTCTCACACTGCCAAAC
ATACCTTCTGCAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAATCCAGATGGAGTTGCAGTTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTT
GAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGATCACACAGGCATTGCTTCATTCTCTAAGTTTGACAACACAAGAAAACGCGTGGTTTCACCTATTCT
AGAACGCGAATTTATAGCCCTTGCATTCAGTCTTGTAACAAATATATTGCTAGACAATAAAATTGAGGTATTCTTGTATACTGCTAAGTTGTGTTCTCCTTTATGCAATT
TTAACTTAGTTTTGTATGTTGTTCAAACATTCATATTTTGTGAATATAGTGGGATGAGAGAATTTGAGCTAATGACCTCTATTAACTTGACAATTGGTGAGTTATGGGGC
GAATGCCTCCTAGGTGCAAATATACATCGTCAGTAAGTAATATAAAACAAAAGTAATTTCAGTATCGAACTCAAGGGAATGGTTTACAAAGCTTTCAATTCGGTTAGAAT
ACAAATTGAGTTCAGATAAGCAATTGAAAGGTAA
Protein sequenceShow/hide protein sequence
MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHV
EIRQFDGSNWEASYDHTGIASFSKFDNTRKRVVSPILEREFIALAFSLVTNILLDNKIEVFLYTAKLCSPLCNFNLVLYVVQTFIFCEYSGMREFELMTSINLTIGELWG
ECLLGANIHRQ