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Lsi08G007690 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G007690
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPsbP domain-containing protein
Genome locationchr08:16084359..16085658
RNA-Seq ExpressionLsi08G007690
SyntenyLsi08G007690
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0019898 - extrinsic component of membrane (cellular component)
GO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002683 - PsbP, C-terminal
IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030019.1 PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-7075.79Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC        R IV                     VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

XP_022946502.1 psbP domain-containing protein 3, chloroplastic [Cucurbita moschata]3.1e-7075.79Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC        R IV                     VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

XP_022999754.1 psbP domain-containing protein 3, chloroplastic [Cucurbita maxima]9.1e-7074.74Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC---------------------LRVIV-------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC                      + +V       VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC---------------------LRVIV-------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

XP_023546046.1 psbP domain-containing protein 3, chloroplastic [Cucurbita pepo subsp. pepo]1.6e-6975.26Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC        R IV                     VVAEDYRTY DEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

XP_038885576.1 psbP domain-containing protein 3, chloroplastic [Benincasa hispida]6.8e-7376.44Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTYTDEA
        MASLPSPSAVIQRPRSWRFS+SS SNG PIPIRS+L VFCSG+NI+ISNQQ C                             L   V+VAEDYRTYTDEA
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTYTDEA

Query:  NKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        NKF+L IPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLI+CRSSKG+
Subjt:  NKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

TrEMBL top hitse value%identityAlignment
A0A0A0KDI5 PsbP domain-containing protein1.5e-6572.68Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFP-IPIRSRLLVFCS--GSNIHISNQQP-----------------------------CLRVIVVVAEDYRTYT
        MASL SPSAVI RP S RFS+SSLSNGF  IPIRS L VFCS  G++IH SN++P                              L   VVVAEDYRTYT
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFP-IPIRSRLLVFCS--GSNIHISNQQP-----------------------------CLRVIVVVAEDYRTYT

Query:  DEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        DEANKF LVIPQDWQVGNGEPNGFKSVTAFFPQETS+SNVSVVISGLGPD+TRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  DEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

A0A6J1DNN6 psbP domain-containing protein 3, chloroplastic isoform X28.1e-6471.28Show/hide
Query:  MASL--PSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLL--VFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTY
        MASL  PSPSAVIQRPR WRF ESSLSNG  I IRS+    V CS +NI IS+ Q C                             L   VVVAED+RTY
Subjt:  MASL--PSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLL--VFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTY

Query:  TDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        TDEANKF+LVIPQDW VGNGEPNGFKSVTAF+PQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  TDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

A0A6J1DRN2 psbP domain-containing protein 3, chloroplastic isoform X18.1e-6471.28Show/hide
Query:  MASL--PSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLL--VFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTY
        MASL  PSPSAVIQRPR WRF ESSLSNG  I IRS+    V CS +NI IS+ Q C                             L   VVVAED+RTY
Subjt:  MASL--PSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLL--VFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTY

Query:  TDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        TDEANKF+LVIPQDW VGNGEPNGFKSVTAF+PQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  TDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

A0A6J1G3W9 psbP domain-containing protein 3, chloroplastic1.5e-7075.79Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC        R IV                     VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

A0A6J1KI01 psbP domain-containing protein 3, chloroplastic4.4e-7074.74Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC---------------------LRVIV-------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC                      + +V       VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC---------------------LRVIV-------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKG+
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM

SwissProt top hitse value%identityAlignment
Q9S720 PsbP domain-containing protein 3, chloroplastic1.9e-4176.24Show/hide
Query:  AEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSK
        +E +R YTDE NKF++ IPQDWQVG  EPNGFKS+TAF+PQETS+SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P GV AKLID R+SK
Subjt:  AEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSK

Query:  G
        G
Subjt:  G

Arabidopsis top hitse value%identityAlignment
AT1G76450.1 Photosystem II reaction center PsbP family protein1.3e-4276.24Show/hide
Query:  AEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSK
        +E +R YTDE NKF++ IPQDWQVG  EPNGFKS+TAF+PQETS+SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P GV AKLID R+SK
Subjt:  AEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSK

Query:  G
        G
Subjt:  G


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGCTCATGGCGCTTCTCAGAATCATCGCTTTCCAATGGATTCCCCATTCCTATCCGCTCAAGACTCCT
TGTTTTCTGCTCTGGCAGCAACATCCACATTTCCAATCAACAACCCTGTTTACGAGTGATAGTTGTGGTTGCTGAGGATTATCGGACGTATACAGATGAAGCGAATAAGT
TCAAATTGGTGATTCCTCAAGATTGGCAAGTGGGTAACGGTGAACCGAATGGATTCAAGTCGGTTACGGCATTTTTTCCTCAAGAAACTTCAAGTTCCAATGTCAGTGTT
GTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAGGAATTTGCTGATACACTGGTGAGCGGATTGGATAGAAGCTGGAAAAGGCCACC
AGGTGTGGCGGCGAAACTTATAGACTGTAGATCGTCAAAAGGTATGTAG
mRNA sequenceShow/hide mRNA sequence
GGCACATTGTACAAAGAAAATCCATCTCCAAACTTCGAGTGGACTGCAAGCATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGCTCATGGCGCTTCTC
AGAATCATCGCTTTCCAATGGATTCCCCATTCCTATCCGCTCAAGACTCCTTGTTTTCTGCTCTGGCAGCAACATCCACATTTCCAATCAACAACCCTGTTTACGAGTGA
TAGTTGTGGTTGCTGAGGATTATCGGACGTATACAGATGAAGCGAATAAGTTCAAATTGGTGATTCCTCAAGATTGGCAAGTGGGTAACGGTGAACCGAATGGATTCAAG
TCGGTTACGGCATTTTTTCCTCAAGAAACTTCAAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAGGA
ATTTGCTGATACACTGGTGAGCGGATTGGATAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCGTCAAAAGGTATGTAG
Protein sequenceShow/hide protein sequence
MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCLRVIVVVAEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSV
VISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGM