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Lsi08G007990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G007990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionWD repeat-containing protein DWA2
Genome locationchr08:16369947..16371534
RNA-Seq ExpressionLsi08G007990
SyntenyLsi08G007990
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR040323 - EARP and GARP complex-interacting protein 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038461.1 WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo var. makuwa]1.1e-4078.45Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSE-RKVDSPPRQGDPLLHSYSDYEDSV
        VTAEDETGISIWDLR+P+VPIQQL GHTHW       T AVRCNPEYDGLILSAGTDSAVNLWLASMSD ELKSE RKVDS PRQGDPLLHSYSDYEDSV
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSE-RKVDSPPRQGDPLLHSYSDYEDSV

Query:  YGNSYCLALLGAFVSL
        YG ++       F SL
Subjt:  YGNSYCLALLGAFVSL

XP_008464867.1 PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo]4.6e-4279.13Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        VTAEDETGISIWDLR+P+VPIQQL GHTHW       T AVRCNPEYDGLILSAGTDSAVNLWLASMSD ELKSERKVDS PRQGDPLLHSYSDYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

XP_008464868.1 PREDICTED: WD repeat-containing protein DWA2-like isoform X2 [Cucumis melo]4.6e-4279.13Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        VTAEDETGISIWDLR+P+VPIQQL GHTHW       T AVRCNPEYDGLILSAGTDSAVNLWLASMSD ELKSERKVDS PRQGDPLLHSYSDYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

XP_022153181.1 WD repeat-containing protein DWA2 [Momordica charantia]6.6e-4176.52Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        VTAEDETGISIWDLRKPKVPIQQL GHTHW       TCAV CNP+YDGLILSAGTDSAVNLWLA +SDGELKSER VDS P +GDPLLHSYSDYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

XP_038886470.1 WD repeat-containing protein DWA2-like [Benincasa hispida]1.2e-4583.48Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        VTAEDETGISIWDLRKPKVPIQQL GHTHW       TCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

TrEMBL top hitse value%identityAlignment
A0A0A0KDH1 WD_REPEATS_REGION domain-containing protein5.5e-4178.26Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        VTAEDETGISIWDLR+PKVPIQQL GHTHW       T AVRCNPEYDGLILSAGTDSAVNLWLASMSD E KSERKVDS PRQ DPLLHSYSDYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

A0A1S3CMG4 WD repeat-containing protein DWA2-like isoform X12.2e-4279.13Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        VTAEDETGISIWDLR+P+VPIQQL GHTHW       T AVRCNPEYDGLILSAGTDSAVNLWLASMSD ELKSERKVDS PRQGDPLLHSYSDYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

A0A1S3CMK2 WD repeat-containing protein DWA2-like isoform X22.2e-4279.13Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        VTAEDETGISIWDLR+P+VPIQQL GHTHW       T AVRCNPEYDGLILSAGTDSAVNLWLASMSD ELKSERKVDS PRQGDPLLHSYSDYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

A0A5A7TA39 WD repeat-containing protein DWA2-like isoform X15.5e-4178.45Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSE-RKVDSPPRQGDPLLHSYSDYEDSV
        VTAEDETGISIWDLR+P+VPIQQL GHTHW       T AVRCNPEYDGLILSAGTDSAVNLWLASMSD ELKSE RKVDS PRQGDPLLHSYSDYEDSV
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSE-RKVDSPPRQGDPLLHSYSDYEDSV

Query:  YGNSYCLALLGAFVSL
        YG ++       F SL
Subjt:  YGNSYCLALLGAFVSL

A0A6J1DJW1 WD repeat-containing protein DWA23.2e-4176.52Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        VTAEDETGISIWDLRKPKVPIQQL GHTHW       TCAV CNP+YDGLILSAGTDSAVNLWLA +SDGELKSER VDS P +GDPLLHSYSDYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

SwissProt top hitse value%identityAlignment
A2AKB9 DDB1- and CUL4-associated factor 106.7e-0436.92Show/hide
Query:  TAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYD---GLILSAGTDSAVNLW
        T  D+T I++WDLRK    +  LHGHT W             N EYD    L++++G D  V +W
Subjt:  TAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYD---GLILSAGTDSAVNLW

Q5FW06 DDB1- and CUL4-associated factor 108.8e-0436.76Show/hide
Query:  MPVTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYD---GLILSAGTDSAVNLW
        M  T  D+T I++WDLRK    +  LHGHT W             N EYD    L++++G D  V +W
Subjt:  MPVTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYD---GLILSAGTDSAVNLW

Q5QP82 DDB1- and CUL4-associated factor 106.7e-0436.92Show/hide
Query:  TAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYD---GLILSAGTDSAVNLW
        T  D+T I++WDLRK    +  LHGHT W             N EYD    L++++G D  V +W
Subjt:  TAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYD---GLILSAGTDSAVNLW

Q6NPN9 WD repeat-containing protein DWA21.3e-2855.65Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        V+A+DE+GI +WDLRK K P+Q+L GHTHW       T AVRCNPEY+ LILS GTDSAVNLW AS S     SE  V++  ++ +PLL+SY+DYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL

Q9U1Q0 EARP-interacting protein 11.0e-0730.33Show/hide
Query:  TAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSD-------
        T  D+  + IWD R     +  LH H HW         +VR +P +D L+L+ G+D++V L  A     E + E + D    + D L+    D       
Subjt:  TAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSD-------

Query:  -YEDSVYGNSYCLALLGAFVSL
         +EDSVY  ++  A    F SL
Subjt:  -YEDSVYGNSYCLALLGAFVSL

Arabidopsis top hitse value%identityAlignment
AT1G20540.1 Transducin/WD40 repeat-like superfamily protein3.5e-3260.34Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELK-SERKVDSPPRQGDPLLHSYSDYEDSV
        VTAEDE+GI +WDLRK KVP+Q+L GHTHW       T AVRCNPEYDGLILSAGTDS VNLW AS +  + K SE  V+S  ++ +PLL+SY+DYEDSV
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELK-SERKVDSPPRQGDPLLHSYSDYEDSV

Query:  YGNSYCLALLGAFVSL
        YG ++       F SL
Subjt:  YGNSYCLALLGAFVSL

AT1G76260.1 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 29.5e-3055.65Show/hide
Query:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY
        V+A+DE+GI +WDLRK K P+Q+L GHTHW       T AVRCNPEY+ LILS GTDSAVNLW AS S     SE  V++  ++ +PLL+SY+DYEDSVY
Subjt:  VTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVY

Query:  GNSYCLALLGAFVSL
        G ++       F SL
Subjt:  GNSYCLALLGAFVSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGTAACTGCTGAGGATGAAACTGGAATATCTATCTGGGACCTTAGAAAGCCAAAAGTCCCGATCCAGCAACTTCATGGGCATACCCACTGGTATCTTTTTAAAGA
GGCCATGACATGTGCTGTTCGTTGTAATCCTGAATATGATGGGCTAATCTTGAGTGCTGGTACTGATTCTGCTGTCAACTTATGGTTGGCATCCATGTCTGATGGTGAAC
TAAAATCTGAAAGGAAGGTCGATTCACCACCACGGCAAGGTGATCCATTATTGCATTCTTACAGTGACTACGAAGACAGTGTTTATGGTAACAGCTATTGCCTTGCCTTG
CTTGGAGCTTTCGTGAGCCTTGGATCTTTGCGTCATTGTCCTACGATGGGAGGTTATGCAAAGTCGGTTGATCGTGTACGTTGTTGTAGAATCAGTGAAGCCTTTTCTCT
CAAGATAATGGAGTTCATATTTAGATTTTCTTTCTCTATATTGTTTGCTTCCTCGGAGTTTCTCATTACGGCAACTGGACTTGTTATAACCTTCTCTCAAACGAGAGTAA
TTGTTACTGAACAAAGCCTCACTAGTCTTTACGATGTTAGCGATGTTAGAGATGAGATTGAGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGTAACTGCTGAGGATGAAACTGGAATATCTATCTGGGACCTTAGAAAGCCAAAAGTCCCGATCCAGCAACTTCATGGGCATACCCACTGGTATCTTTTTAAAGA
GGCCATGACATGTGCTGTTCGTTGTAATCCTGAATATGATGGGCTAATCTTGAGTGCTGGTACTGATTCTGCTGTCAACTTATGGTTGGCATCCATGTCTGATGGTGAAC
TAAAATCTGAAAGGAAGGTCGATTCACCACCACGGCAAGGTGATCCATTATTGCATTCTTACAGTGACTACGAAGACAGTGTTTATGGTAACAGCTATTGCCTTGCCTTG
CTTGGAGCTTTCGTGAGCCTTGGATCTTTGCGTCATTGTCCTACGATGGGAGGTTATGCAAAGTCGGTTGATCGTGTACGTTGTTGTAGAATCAGTGAAGCCTTTTCTCT
CAAGATAATGGAGTTCATATTTAGATTTTCTTTCTCTATATTGTTTGCTTCCTCGGAGTTTCTCATTACGGCAACTGGACTTGTTATAACCTTCTCTCAAACGAGAGTAA
TTGTTACTGAACAAAGCCTCACTAGTCTTTACGATGTTAGCGATGTTAGAGATGAGATTGAGAATTGA
Protein sequenceShow/hide protein sequence
MPVTAEDETGISIWDLRKPKVPIQQLHGHTHWYLFKEAMTCAVRCNPEYDGLILSAGTDSAVNLWLASMSDGELKSERKVDSPPRQGDPLLHSYSDYEDSVYGNSYCLAL
LGAFVSLGSLRHCPTMGGYAKSVDRVRCCRISEAFSLKIMEFIFRFSFSILFASSEFLITATGLVITFSQTRVIVTEQSLTSLYDVSDVRDEIEN