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Lsi08G008050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G008050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 5
Genome locationchr08:16428658..16431873
RNA-Seq ExpressionLsi08G008050
SyntenyLsi08G008050
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020712.1 hypothetical protein SDJN02_17399 [Cucurbita argyrosperma subsp. argyrosperma]3.9e-5088.06Show/hide
Query:  MADCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFI
        ++ C KSS LHRRP+S EAK+ RSRG+AMITRSNLVEQLREYQIRSKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQL  I
Subjt:  MADCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFI

Query:  LVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        LVCITMLLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  LVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

XP_004144225.1 uncharacterized protein LOC101213289 [Cucumis sativus]1.6e-5193.98Show/hide
Query:  CVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFIL
        C  SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQL FIL
Subjt:  CVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFIL

Query:  VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

XP_008464874.1 PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo]7.1e-5293.98Show/hide
Query:  CVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFIL
        C +SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQL FIL
Subjt:  CVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFIL

Query:  VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

XP_022951473.1 uncharacterized protein LOC111454282 [Cucurbita moschata]3.9e-5088.06Show/hide
Query:  MADCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFI
        ++ C KSS LHRRP+S EAK+ RSRG+AMITRSNLVEQLREYQIRSKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQL  I
Subjt:  MADCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFI

Query:  LVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        LVCITMLLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  LVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

XP_038884232.1 uncharacterized protein LOC120075129 [Benincasa hispida]1.1e-5597.71Show/hide
Query:  CVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVC
        CVKSSILH RPSSLEAKKR+SRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQL FILVC
Subjt:  CVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVC

Query:  ITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        ITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  ITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

TrEMBL top hitse value%identityAlignment
A0A0A0KIH9 Uncharacterized protein7.7e-5293.98Show/hide
Query:  CVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFIL
        C  SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQL FIL
Subjt:  CVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFIL

Query:  VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

A0A1S3CMK7 uncharacterized protein LOC103502637 isoform X13.4e-5293.98Show/hide
Query:  CVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFIL
        C +SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQL FIL
Subjt:  CVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFIL

Query:  VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

A0A6J1G568 uncharacterized protein LOC1114507861.4e-4887.79Show/hide
Query:  CVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVC
        CVK  ILHRRPS    +K  SRG+AMITRSNLVEQLREYQIRSKH+WAS SFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTF+LVC
Subjt:  CVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVC

Query:  ITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        ITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  ITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

A0A6J1GHS6 uncharacterized protein LOC1114542821.9e-5088.06Show/hide
Query:  MADCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFI
        ++ C KSS LHRRP+S EAK+ RSRG+AMITRSNLVEQLREYQIRSKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQL  I
Subjt:  MADCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFI

Query:  LVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        LVCITMLLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  LVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

A0A6J1KBR2 uncharacterized protein LOC1114940245.1e-4886.26Show/hide
Query:  CVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVC
        CVK  I HRRPS    +K  SRG+AMITRSNLVEQLREYQIRSKH+WAS SFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTF+L+C
Subjt:  CVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVC

Query:  ITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
        ITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  ITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G20460.1 unknown protein3.2e-4285.85Show/hide
Query:  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVCITMLLLLCMKVTKQVRLARKKKRRM
        MITRSNL EQLREYQIRSKH+WASVSFFSSTSN +SSRVDVV+FVIWEL+IL+F VFSAVSLYF+ +QL FILVC+T+LLL+CMKVTKQVRLARKKKRRM
Subjt:  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVCITMLLLLCMKVTKQVRLARKKKRRM

Query:  LLPLSM
        LLPLSM
Subjt:  LLPLSM

AT1G76185.1 unknown protein1.3e-4083.02Show/hide
Query:  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVCITMLLLLCMKVTKQVRLARKKKRRM
        MITRSNL EQLREYQIRSKH+WASVSFFSSTSN +SSRVDVV+FVIWEL++L+ +VFSAVSLYFR +QL FIL+C+T+LLLLCMK+TKQVR ARKKKRRM
Subjt:  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVCITMLLLLCMKVTKQVRLARKKKRRM

Query:  LLPLSM
        LLPLSM
Subjt:  LLPLSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACTGTGTTAAATCCTCCATTCTCCACCGTCGCCCTTCCTCCCTTGAGGCAAAGAAGAGAAGGTCTCGGGGTTCAGCCATGATTACTCGATCGAATCTGGTTGA
GCAGTTGAGAGAATACCAGATTCGATCCAAGCACGAGTGGGCTTCCGTCTCCTTCTTCTCTTCTACCTCCAATATTACATCCTCCAGGGTTGATGTAGTGATTTTTGTAA
TATGGGAACTCATAATCCTATCCTTCTTGGTGTTTTCGGCAGTTTCTTTATATTTTCGGCATATGCAGTTGACTTTTATTTTAGTATGCATCACGATGTTATTGCTTCTA
TGCATGAAAGTTACAAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACTGTGTTAAATCCTCCATTCTCCACCGTCGCCCTTCCTCCCTTGAGGCAAAGAAGAGAAGGTCTCGGGGTTCAGCCATGATTACTCGATCGAATCTGGTTGA
GCAGTTGAGAGAATACCAGATTCGATCCAAGCACGAGTGGGCTTCCGTCTCCTTCTTCTCTTCTACCTCCAATATTACATCCTCCAGGGTTGATGTAGTGATTTTTGTAA
TATGGGAACTCATAATCCTATCCTTCTTGGTGTTTTCGGCAGTTTCTTTATATTTTCGGCATATGCAGTTGACTTTTATTTTAGTATGCATCACGATGTTATTGCTTCTA
TGCATGAAAGTTACAAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGAAAAATCTGATAGTAGAAGGAGAGATATACTAAACC
TTTTTTTTTTATGTTCTAAATTCCCCGAATTATATTCACAAAAATTAGATTTGGTCCTTTCTCCTCCCCCACTACTCTTTGTTATATCGTGATCTGTAATCACCAGGAAA
ACAGGTTTATCCCAGAAAAAAGAAAAAAGAAAAAAAAAGGGGAAAAAAAAAAAAAGAGAATGAGATTGAGATGAATGTGAGTAGTTTAGAAATTTGTGAATGCTTTTTTA
TCCGAGTTTGGATCCTCTTCATGATTTTTCAATTGTTATTTTACCCCTCTACTCGTAGTTGGGTGATGTTTATGGTATGTATGAGAGTGATTTTGAAATAGATAAAATCA
CTTTTGTCATTTTCAAAATATTTATAAAAATCGTCTTTAATTATTTAAGTATGAAAACTGTGTTTAATGGGTCAAAACCAAACCTAGAGTGGTTTTAAAAATTACAAGCA
ATTTTCATCTTTTGAAAATCACTTAGGCCTTTGGCTTATTAATTTAATGTCTCATTGATTTATCATTGTTCTCCTTACATTTTATTAAATATTAGTCCTGTTTGTCACAT
ATATGTTGGTGTTTGGAATGAAAAAACGTGTATGGAAATTACAAA
Protein sequenceShow/hide protein sequence
MADCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFILVCITMLLLL
CMKVTKQVRLARKKKRRMLLPLSM