; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G008170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G008170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCX9C domain-containing protein
Genome locationchr08:16506564..16508179
RNA-Seq ExpressionLsi08G008170
SyntenyLsi08G008170
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR009069 - Cysteine alpha-hairpin motif superfamily
IPR017264 - Ribosomal protein MRP10, mitochondrial
IPR031731 - IMS import disulfide relay-system, CHCH-CHCH-like Cx9C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021278827.1 uncharacterized protein LOC110412585 isoform X1 [Herrania umbratica]1.4e-3276.09Show/hide
Query:  ILESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        +++S  MG+KAG LYINPKKFG+LSKPCMKEM+SFLNCLSLN+NND+KC RQKDLL+ CMDAQ      SNKNRKPWGSINYHLQRL++GRK
Subjt:  ILESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

XP_022157440.1 uncharacterized protein LOC111024138 [Momordica charantia]2.1e-3382.56Show/hide
Query:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        MGRKAGTLYINPKKFG LSKPCMKEM+SFLNC++LNQNND+KCTR K+LLNTCMDAQ      SN+NRKPWGSINYHLQRLS+GRK
Subjt:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

XP_022157885.1 uncharacterized protein LOC111024495 isoform X1 [Momordica charantia]4.3e-3481.11Show/hide
Query:  ESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        E V MGRKAGTLYINPKKFG LSKPCMKEM+SFLNC++LNQNND+KCTR K+LLNTCMDAQ      SN+NRKPWGSINYHLQRLS+GRK
Subjt:  ESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

XP_022946561.1 uncharacterized protein LOC111450585 [Cucurbita moschata]6.2e-3381.4Show/hide
Query:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        MGRKAGTLYINPKKFG LSKPCMKEM+SFLNC++LN NNDEKCTR K++LNTCMDAQ      SN+NRKPWGSINYHLQRLS+GRK
Subjt:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

XP_022999786.1 uncharacterized protein LOC111494031 [Cucurbita maxima]3.6e-3382.56Show/hide
Query:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        MGRKAGTLYINPKKFG LSKPCMKEM+SFLNC++LN NNDEKCTR K+LLNTCMDAQ      SN+NRKPWGSINYHLQRLS+GRK
Subjt:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

TrEMBL top hitse value%identityAlignment
A0A0A0KD09 CX9C domain-containing protein1.6e-3466.96Show/hide
Query:  VGWNEIRVMRTVTFHLIHFEILESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSI
        +GWNEIR   +VT             MGRKAG+L+INPKKFGNL+KPCMKEMVSFLNC++LNQNNDEKCTR K+LLNTCMDAQ T      +++KPWGSI
Subjt:  VGWNEIRVMRTVTFHLIHFEILESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSI

Query:  NYHLQRLSKGRK
        NYHLQRL++GRK
Subjt:  NYHLQRLSKGRK

A0A6J1DU96 uncharacterized protein LOC111024495 isoform X12.1e-3481.11Show/hide
Query:  ESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        E V MGRKAGTLYINPKKFG LSKPCMKEM+SFLNC++LNQNND+KCTR K+LLNTCMDAQ      SN+NRKPWGSINYHLQRLS+GRK
Subjt:  ESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

A0A6J1DVQ0 uncharacterized protein LOC1110241381.0e-3382.56Show/hide
Query:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        MGRKAGTLYINPKKFG LSKPCMKEM+SFLNC++LNQNND+KCTR K+LLNTCMDAQ      SN+NRKPWGSINYHLQRLS+GRK
Subjt:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

A0A6J1G420 uncharacterized protein LOC1114505853.0e-3381.4Show/hide
Query:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        MGRKAGTLYINPKKFG LSKPCMKEM+SFLNC++LN NNDEKCTR K++LNTCMDAQ      SN+NRKPWGSINYHLQRLS+GRK
Subjt:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

A0A6J1KBS0 uncharacterized protein LOC1114940311.8e-3382.56Show/hide
Query:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        MGRKAGTLYINPKKFG LSKPCMKEM+SFLNC++LN NNDEKCTR K+LLNTCMDAQ      SN+NRKPWGSINYHLQRLS+GRK
Subjt:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G47278.1 unknown protein1.9e-2765.12Show/hide
Query:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        MGRKAG LYINPKK GNL+KPCMKEMVSFLNC++LN   D+KC +QK LL+ CM  Q      S+   K WG+INYHLQRL++GRK
Subjt:  MGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK

AT1G47278.2 unknown protein9.8e-2961.7Show/hide
Query:  FEILESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK
        F ++E   MGRKAG LYINPKK GNL+KPCMKEMVSFLNC++LN   D+KC +QK LL+ CM  Q      S+   K WG+INYHLQRL++GRK
Subjt:  FEILESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKGRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGGGATGGAATGAGATAAGGGTGATGAGGACTGTAACCTTCCACCTTATCCATTTTGAAATTTTGGAGTCTGTACCAATGGGTAGGAAAGCTGGCACTTTATATATCAA
CCCAAAGAAGTTTGGCAATCTTAGCAAACCTTGCATGAAGGAGATGGTATCATTTCTCAATTGCTTATCTCTTAATCAAAACAACGATGAAAAGTGCACCAGGCAGAAGG
ACCTTCTAAATACTTGCATGGATGCTCAGGTGACTCTTTCGCTACTTTCCAACAAAAACAGGAAACCCTGGGGTAGCATTAATTATCACTTGCAGAGGCTCAGCAAGGGA
AGAAAATAG
mRNA sequenceShow/hide mRNA sequence
GTGGGATGGAATGAGATAAGGGTGATGAGGACTGTAACCTTCCACCTTATCCATTTTGAAATTTTGGAGTCTGTACCAATGGGTAGGAAAGCTGGCACTTTATATATCAA
CCCAAAGAAGTTTGGCAATCTTAGCAAACCTTGCATGAAGGAGATGGTATCATTTCTCAATTGCTTATCTCTTAATCAAAACAACGATGAAAAGTGCACCAGGCAGAAGG
ACCTTCTAAATACTTGCATGGATGCTCAGGTGACTCTTTCGCTACTTTCCAACAAAAACAGGAAACCCTGGGGTAGCATTAATTATCACTTGCAGAGGCTCAGCAAGGGA
AGAAAATAGTTTGAGATTCCATTGAGAGAGCGCTTAATTAGCTCTATGAACAGAATTCAGAGGAAAATCTGCAAGAATTGTTTGAATTTTGAACTGACAAAGTTGTCTAC
AGAGAATTCTTGTTAGAATCAATACCCAGGTGCAATTCCTTGACGTAATTGTTATGATATTTAGTGCATTTCCTAAGGTATATTTGGTTGGGAAACTTATTTGTTGGCTT
CTTTCTTGTTGTCAAATATTTAAGAGCTCTACTTTTATCGTATCAAGTAATTATGAATCTCAACTAGGATAATAAATATTCTACGGATTTCCTGCTGTCAAATCTTGTAG
ATAATAATTGTTGTATGACAAATAGTTATTAATTTTGCCAATTAATTT
Protein sequenceShow/hide protein sequence
VGWNEIRVMRTVTFHLIHFEILESVPMGRKAGTLYINPKKFGNLSKPCMKEMVSFLNCLSLNQNNDEKCTRQKDLLNTCMDAQVTLSLLSNKNRKPWGSINYHLQRLSKG
RK