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Lsi08G008410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G008410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPHD finger protein ALFIN-LIKE 4
Genome locationchr08:16866771..16868471
RNA-Seq ExpressionLsi08G008410
SyntenyLsi08G008410
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsIPR021998 - Alfin, N-terminal
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445525.1 PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo]2.4e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

XP_022951576.1 PHD finger protein ALFIN-LIKE 4-like isoform X2 [Cucurbita moschata]2.4e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

XP_022962096.1 PHD finger protein ALFIN-LIKE 4-like isoform X2 [Cucurbita moschata]2.4e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

XP_023537594.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita pepo subsp. pepo]2.4e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

XP_038884925.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida]2.4e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

TrEMBL top hitse value%identityAlignment
A0A0A0KDK0 PHD-type domain-containing protein1.1e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

A0A6J1GJ74 PHD finger protein ALFIN-LIKE 4-like isoform X11.1e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

A0A6J1HC47 PHD finger protein ALFIN-LIKE 4-like isoform X21.1e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

A0A6J1K4G7 PHD finger protein ALFIN-LIKE 4-like isoform X11.1e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

A0A6J1KDA9 PHD finger protein ALFIN-LIKE 4-like isoform X21.1e-4267.63Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        MDGGAPYNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

SwissProt top hitse value%identityAlignment
B8B8C5 PHD finger protein ALFIN-LIKE 93.3e-3962.22Show/hide
Query:  APYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKD
        A YNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFP+E WEVNLPAEEVPPELPEPALGINFARDGMQEKD
Subjt:  APYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKD

Query:  WLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        WLS+VAVHSD WLLSVAFYFGARFGFDK DR   F
Subjt:  WLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

O81488 PHD finger protein ALFIN-LIKE 41.7e-3858.27Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        M+ G  YNPRTVEE+ +                     +  +     DV+ F      +KENLCLYG P+E WEVNLPAEEVPPELPEP LGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
         EKDWLSLVAVHSD WLL+VAF+FGARFGFDK DR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

Q5XEM9 PHD finger protein ALFIN-LIKE 52.4e-3757.86Show/hide
Query:  MDGG-APYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDG
        M+GG A Y+PRTVEE+ +        +               +     DV  F      +K+NLCLYGFP+E WEVNLPAEEVPPELPEPALGINFARDG
Subjt:  MDGG-APYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDG

Query:  MQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        MQE++WLSLVAVHSD WLLSV+FYFG+RFGFD+ DR   F
Subjt:  MQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

Q6YTY3 PHD finger protein ALFIN-LIKE 93.3e-3962.22Show/hide
Query:  APYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKD
        A YNPRTVEE+ +                     +  +     DV  F      +KENLCLYGFP+E WEVNLPAEEVPPELPEPALGINFARDGMQEKD
Subjt:  APYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKD

Query:  WLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        WLS+VAVHSD WLLSVAFYFGARFGFDK DR   F
Subjt:  WLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

Q9M2B4 PHD finger protein ALFIN-LIKE 31.5e-3656.43Show/hide
Query:  MDGGAP-YNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDG
        M+GGA  YNPRTVEE+ K        +               +     DV+ F      +KENLCLYG P+E+WEVNLPAEEVPPELPEPALGINFARDG
Subjt:  MDGGAP-YNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDG

Query:  MQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        + EK+WLSLVA+HSD WLLSV+FYFG+RF F K +R   F
Subjt:  MQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

Arabidopsis top hitse value%identityAlignment
AT2G02470.1 alfin-like 66.0e-3683.95Show/hide
Query:  KKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        +KENLCLYG P+E WEVNLP EEVPPELPEPALGINFARDGMQEKDW+SLVAVHSD WLLSVAFYFGARFGF K +R   F
Subjt:  KKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

AT2G02470.2 alfin-like 66.0e-3683.95Show/hide
Query:  KKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        +KENLCLYG P+E WEVNLP EEVPPELPEPALGINFARDGMQEKDW+SLVAVHSD WLLSVAFYFGARFGF K +R   F
Subjt:  KKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

AT3G42790.1 alfin-like 31.1e-3756.43Show/hide
Query:  MDGGAP-YNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDG
        M+GGA  YNPRTVEE+ K        +               +     DV+ F      +KENLCLYG P+E+WEVNLPAEEVPPELPEPALGINFARDG
Subjt:  MDGGAP-YNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDG

Query:  MQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        + EK+WLSLVA+HSD WLLSV+FYFG+RF F K +R   F
Subjt:  MQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

AT5G20510.1 alfin-like 51.7e-3857.86Show/hide
Query:  MDGG-APYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDG
        M+GG A Y+PRTVEE+ +        +               +     DV  F      +K+NLCLYGFP+E WEVNLPAEEVPPELPEPALGINFARDG
Subjt:  MDGG-APYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDG

Query:  MQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
        MQE++WLSLVAVHSD WLLSV+FYFG+RFGFD+ DR   F
Subjt:  MQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF

AT5G26210.1 alfin-like 41.2e-3958.27Show/hide
Query:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM
        M+ G  YNPRTVEE+ +                     +  +     DV+ F      +KENLCLYG P+E WEVNLPAEEVPPELPEP LGINFARDGM
Subjt:  MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGM

Query:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF
         EKDWLSLVAVHSD WLL+VAF+FGARFGFDK DR   F
Subjt:  QEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGCGGCGCTCCGTACAATCCACGTACCGTGGAAGAGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGGTTTGTTTTATCGCTTCTTCGTTTACGTTTTTGGA
TTCTAGTGTGCATTTGTCCGAGACTGAGAGAGATGTTAGAATTTTCAGCTTATTTTCCTTAGCTAAGAAAGAAAATCTTTGCCTATACGGATTCCCTAGTGAGCAGTGGG
AAGTCAATTTACCTGCGGAAGAGGTTCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATTAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCA
GTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGTATGTGTTCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGCGGCGCTCCGTACAATCCACGTACCGTGGAAGAGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGGTTTGTTTTATCGCTTCTTCGTTTACGTTTTTGGA
TTCTAGTGTGCATTTGTCCGAGACTGAGAGAGATGTTAGAATTTTCAGCTTATTTTCCTTAGCTAAGAAAGAAAATCTTTGCCTATACGGATTCCCTAGTGAGCAGTGGG
AAGTCAATTTACCTGCGGAAGAGGTTCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATTAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCA
GTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGTATGTGTTCTTCTGATCTGGCCTTTGTTATTATAT
ATTAATGATTCATACATAGTATGTTTTACACTGTTTGTAGGCTGTAGCGAAGGCCTGGGTATGAGTTTCAACTCTCTCTCTCTCTCCCTCTCTCTGTCTTTTTAATTTTC
TTTAAGCAGTTCTTAATTTAGTATTTGGTTCAACAGTTTCTCATTTCACACGTTATTGGTGAACTTTTTGTCTCTGCCTCTGGATTTCTTATTTCTTTGGATATTGGTGA
TAGGTTTTGCAACTCCATATATGCTTTCTATGATCTAAAATTTTATAACGGGAGTTTTTCGTGGCGTGCTATATTTTGGTTATTGTTTCGGATCGATTTTTTATAGCCAA
TCTCTTTCTCTTGAGAGACTGTACACTTATTATTTTCTCATATCATATGTTTTACACAAGGAAGCACAGATACTTTTGTTTGGGTCTTGGGAATGTGCAGTGTGTGATTT
TGACACTCGTTGAATATATTGGACATGTGTTGGGTACTTGCCTAACACATGAGACACAAACGCTTGTTGAACATATTGGATGAATGTATTTGGGACAATTATTGAGCACT
TCATTTTAAGTGTAA
Protein sequenceShow/hide protein sequence
MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVA
VHSDVWLLSVAFYFGARFGFDKTDRYVFF