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Lsi08G008570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G008570
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationchr08:16985120..16985638
RNA-Seq ExpressionLsi08G008570
SyntenyLsi08G008570
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064726.1 classical arabinogalactan protein 9-like [Cucumis melo var. makuwa]4.4e-6276.5Show/hide
Query:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------
        HFSS+LILL   LAG   AA ED  VV+VVPPVSLLCISECSTCP ICAPPPPPP  VLKSPPPV HVPPLAYFPLNSPPPRPT SPPP           
Subjt:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------

Query:  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLMLSSW
        A A +SHSPPPPAF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+N+YNYYFYAP SSS  PSLP AFF GLFLFHL+L SW
Subjt:  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLMLSSW

XP_008445508.1 PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo]7.2e-5775.86Show/hide
Query:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------
        HFSS+LILL   LAG   AA ED  VV+VVPPVSLLCISECSTCP ICAPPPPPP  VLKSPPPV HVPPLAYFPLNSPPPRPT SPPP           
Subjt:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------

Query:  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLF
        A A +SHSPPPPAF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+N+YNYYFYAP SSS  PSLP AFFG  F
Subjt:  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLF

XP_011657382.1 extensin [Cucumis sativus]1.3e-6175.54Show/hide
Query:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICA-PPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP----------
        HFSS+LILL   LA    A  ED  VVEVVPPVSLLCISECSTCP ICA PPPPPP +VLKSPPPV HVPPLAYFPLNSPPPRPT SPPP          
Subjt:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICA-PPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP----------

Query:  -AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLMLSSW
         A A +SHSPPPPAF+YYFNLPPPPPVLIPVPVPP+ TA PHGNTN+N+YNYYFYAP SSS  PSLP A F GLFLFHLML SW
Subjt:  -AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLMLSSW

XP_022132157.1 leucine-rich repeat extensin-like protein 3 [Momordica charantia]1.9e-4969.23Show/hide
Query:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSP----PPRPTPS--------PP
        HFS L ILL   LAGA AAA+ED  +VEVVPPVSLLCISECSTCP IC+ PPPPP   LKSPPP  H PPLAY PLN+P    PPRPTPS        P 
Subjt:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSP----PPRPTPS--------PP

Query:  PAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLMLSSW
        P  AA SH PPPPAF YYFNLPPPPPVLIPVPVPP  TAAPHGNTN+N+YNYYFYA  SSS SLPA +   LF+F  M S W
Subjt:  PAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLMLSSW

XP_023536686.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]8.8e-4770.45Show/hide
Query:  MEHFSS---LLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSP--PPRPTPSPPP---A
        MEH ++     ILL F LAG  A A++D  +VEVVPPVSLLCISECSTCP ICA PPPPP V LKSPPPV H PP+A FPLN P  PPRPTPSPPP    
Subjt:  MEHFSS---LLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSP--PPRPTPSPPP---A

Query:  AAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLM
        AA +SHSPPPPAFKYYF+LPPPPPVLIP P+PP TTAAPHGNTNA  YNYYFYA  S S + P AF   LFLFHL+
Subjt:  AAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLM

TrEMBL top hitse value%identityAlignment
A0A0A0KD44 Uncharacterized protein6.1e-6275.54Show/hide
Query:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICA-PPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP----------
        HFSS+LILL   LA    A  ED  VVEVVPPVSLLCISECSTCP ICA PPPPPP +VLKSPPPV HVPPLAYFPLNSPPPRPT SPPP          
Subjt:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICA-PPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP----------

Query:  -AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLMLSSW
         A A +SHSPPPPAF+YYFNLPPPPPVLIPVPVPP+ TA PHGNTN+N+YNYYFYAP SSS  PSLP A F GLFLFHLML SW
Subjt:  -AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLMLSSW

A0A1S3BCX5 classical arabinogalactan protein 9-like3.5e-5775.86Show/hide
Query:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------
        HFSS+LILL   LAG   AA ED  VV+VVPPVSLLCISECSTCP ICAPPPPPP  VLKSPPPV HVPPLAYFPLNSPPPRPT SPPP           
Subjt:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------

Query:  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLF
        A A +SHSPPPPAF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+N+YNYYFYAP SSS  PSLP AFFG  F
Subjt:  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLF

A0A5A7VEH7 Classical arabinogalactan protein 9-like2.1e-6276.5Show/hide
Query:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------
        HFSS+LILL   LAG   AA ED  VV+VVPPVSLLCISECSTCP ICAPPPPPP  VLKSPPPV HVPPLAYFPLNSPPPRPT SPPP           
Subjt:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------

Query:  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLMLSSW
        A A +SHSPPPPAF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+N+YNYYFYAP SSS  PSLP AFF GLFLFHL+L SW
Subjt:  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLMLSSW

A0A6J1BT26 leucine-rich repeat extensin-like protein 39.2e-5069.23Show/hide
Query:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSP----PPRPTPS--------PP
        HFS L ILL   LAGA AAA+ED  +VEVVPPVSLLCISECSTCP IC+ PPPPP   LKSPPP  H PPLAY PLN+P    PPRPTPS        P 
Subjt:  HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSP----PPRPTPS--------PP

Query:  PAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLMLSSW
        P  AA SH PPPPAF YYFNLPPPPPVLIPVPVPP  TAAPHGNTN+N+YNYYFYA  SSS SLPA +   LF+F  M S W
Subjt:  PAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLMLSSW

A0A6J1GGS2 extensin-3-like2.1e-4669.32Show/hide
Query:  MEHFSS---LLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSP--PPRPTPSPPP---A
        MEH ++     ILL  HLAGA A A+++  +VEVVPPVSLLCISECSTCP ICA PPPPP V LKSPPPV H PP+A FPLN P  PPRP+PSPPP    
Subjt:  MEHFSS---LLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSP--PPRPTPSPPP---A

Query:  AAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLM
         AA+SHSPPPPAFKYYF+LPPPPPVLIP P+PP TTAAPHGNTNA  YNYYFYA  S S + P  F   LFLFHL+
Subjt:  AAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLM

SwissProt top hitse value%identityAlignment
Q9SN46 Leucine-rich repeat extensin-like protein 51.5e-0448.65Show/hide
Query:  PPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP--SPPPAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPP
        PPPP   + SPPP +H P + Y    SPPP PT   +PPP  + A +SPPP    YY+N PPPPP +   P PP
Subjt:  PPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP--SPPPAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPP

Arabidopsis top hitse value%identityAlignment
AT2G14890.1 arabinogalactan protein 99.8e-0436.59Show/hide
Query:  SLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPP---PPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP---SPPPAAAAASHS
        ++ ++    +AG T  A          PP         +T P    PPP   PPP  V  SPPPVT  PP    P N PPP  +P   SPPPA      S
Subjt:  SLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPP---PPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP---SPPPAAAAASHS

Query:  PPPPAFKYYFNLPP--PPPVLIPVPV----PPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAA
        PPPP      + PP  PPPV  P P     PPA   AP   T  +S +       SSSP LP++
Subjt:  PPPPAFKYYFNLPP--PPPVLIPVPV----PPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAA

AT2G14890.2 arabinogalactan protein 99.8e-0436.59Show/hide
Query:  SLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPP---PPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP---SPPPAAAAASHS
        ++ ++    +AG T  A          PP         +T P    PPP   PPP  V  SPPPVT  PP    P N PPP  +P   SPPPA      S
Subjt:  SLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPP---PPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP---SPPPAAAAASHS

Query:  PPPPAFKYYFNLPP--PPPVLIPVPV----PPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAA
        PPPP      + PP  PPPV  P P     PPA   AP   T  +S +       SSSP LP++
Subjt:  PPPPAFKYYFNLPP--PPPVLIPVPV----PPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAA

AT4G13340.1 Leucine-rich repeat (LRR) family protein7.5e-0439.25Show/hide
Query:  PPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPPAAAAASHSPPPPAFKYYFNLPPPPPVLIP---VPVPPATTAAPHGNTNANSYNYYFYAPT
        PPPPPP V    PPP    PP  Y P   PPP P P PPP  +    SPPPP    Y   PPPPP   P    P PP   ++P    +      Y   P 
Subjt:  PPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPPAAAAASHSPPPPAFKYYFNLPPPPPVLIP---VPVPPATTAAPHGNTNANSYNYYFYAPT

Query:  SSSPSLP
           P  P
Subjt:  SSSPSLP

AT4G18670.1 Leucine-rich repeat (LRR) family protein1.1e-0548.65Show/hide
Query:  PPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP--SPPPAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPP
        PPPP   + SPPP +H P + Y    SPPP PT   +PPP  + A +SPPP    YY+N PPPPP +   P PP
Subjt:  PPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP--SPPPAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPP

AT5G11990.1 proline-rich family protein5.4e-1036.81Show/hide
Query:  LILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP---SPPPAAAAASHSP----
        LI++   L      A+       V+ P   LCISECSTCP IC+PPP         P P    PP    PL+S PP P P   SPPP + + S  P    
Subjt:  LILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTP---SPPPAAAAASHSP----

Query:  --PPPAFKYYFNLPPPPPVLIP-----VPVPPATTAAPHGNTNANS---YNY-YFYAPTSSSPSLPAAFFGGLFLFHLMLSS
          PPP   YYF   PPPP L P      P  P++  +P G +       Y + YFY  T+S+ +L    F   FL  L++SS
Subjt:  --PPPAFKYYFNLPPPPPVLIP-----VPVPPATTAAPHGNTNANS---YNY-YFYAPTSSSPSLPAAFFGGLFLFHLMLSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATTTCTCTTCCCTTCTCATTCTCCTGTTCTTCCACCTCGCCGGAGCTACGGCGGCAGCAGCCGAAGACGACCATGTGGTCGAGGTGGTTCCCCCGGTTAGCCT
TCTTTGTATCAGCGAATGTTCAACTTGCCCTGCCATATGTGCGCCACCGCCGCCGCCGCCCATGGTGGTGCTCAAGTCACCCCCGCCTGTGACCCATGTGCCACCACTGG
CTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAAT
TTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGCTCC
GACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACATTTCTCTTCCCTTCTCATTCTCCTGTTCTTCCACCTCGCCGGAGCTACGGCGGCAGCAGCCGAAGACGACCATGTGGTCGAGGTGGTTCCCCCGGTTAGCCT
TCTTTGTATCAGCGAATGTTCAACTTGCCCTGCCATATGTGCGCCACCGCCGCCGCCGCCCATGGTGGTGCTCAAGTCACCCCCGCCTGTGACCCATGTGCCACCACTGG
CTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAAT
TTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGCTCC
GACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA
Protein sequenceShow/hide protein sequence
MEHFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPPAAAAASHSPPPPAFKYYFN
LPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLMLSSW