; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G008600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G008600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein, putative
Genome locationchr08:17020410..17021078
RNA-Seq ExpressionLsi08G008600
SyntenyLsi08G008600
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064730.1 putative transmembrane protein [Cucumis melo var. makuwa]1.1e-8984.38Show/hide
Query:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATD-NKADENASP-TTTPSPATATNPSGGETENDGEEQRMKELPLP
        MVRSFPTD+NPLIHPAISL+LLA GMAAAIAMITTLCGVRSRRRS PSEASSPTAT+ NKA+EN SP TTTPS ATA NPS  ETEN+GE   +KELPLP
Subjt:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATD-NKADENASP-TTTPSPATATNPSGGETENDGEEQRMKELPLP

Query:  PKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS
        PKMQQV +SSPP+QI KSASERKLNHM+SMSIKVPRSLSVVRNHLDEGR RRKEK+KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKI+AYHPRA S
Subjt:  PKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS

Query:  SMSISISRQSSAIDAEALPNPEPK
        SMSIS+SRQ+SA +AEALPN E K
Subjt:  SMSISISRQSSAIDAEALPNPEPK

KAG6585751.1 hypothetical protein SDJN03_18484, partial [Cucurbita argyrosperma subsp. sororia]2.4e-6072.64Show/hide
Query:  LAVGMAAAIAMITTLCGV--RSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDG--EEQRMKELPLPPKMQQVANSSPPSQIAKSA
        +A GM AAIAMIT LCGV  RSRR SPPSEASS TA D K D N S TTT S A  T P  GE+ NDG   E+ MKELPLPPKMQQVA+ SPPS+IAKSA
Subjt:  LAVGMAAAIAMITTLCGV--RSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDG--EEQRMKELPLPPKMQQVANSSPPSQIAKSA

Query:  SERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSMSISISRQSSAIDAEALP
        SER+L HM S+++KVPRS SV R  L+EG  RRKEKM  EE IW KTIILGEKC+V DEEDG+IYEGKGK+ISAYHPR+ SSMSISISRQSSAIDAEALP
Subjt:  SERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSMSISISRQSSAIDAEALP

Query:  N
        +
Subjt:  N

KAG6598610.1 hypothetical protein SDJN03_08388, partial [Cucurbita argyrosperma subsp. sororia]1.1e-8477.93Show/hide
Query:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDGEEQRMKELPLPPK
        MVRSFPTDENPLIHPAISL LLA GMAAAIAMITTLCG RSR+    SEASSPTA DNK DENASPT         NPSGGET NDG+EQ +KELPLPPK
Subjt:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDGEEQRMKELPLPPK

Query:  MQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSM
        MQQ+ ++SPP+QI+KSASERKL HMKSM++ VPRSLSV R++LD+GRH++K+K+KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKISAYHPRA SSM
Subjt:  MQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSM

Query:  SISISRQSSAIDAEALPNPEPK
        S S+SRQ SAIDAEALP+PE K
Subjt:  SISISRQSSAIDAEALPNPEPK

KGN47811.2 hypothetical protein Csa_018925 [Cucumis sativus]1.3e-8781.53Show/hide
Query:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDGEEQRMKELPLPPK
        MVRSFPTD+NPLIHPAI L+LLA GMAAAI+MITTLCGVRSRRRS PSE SS  A DNK DEN SPTTT +P  A NPSGGE EN+GE   MKELPLPPK
Subjt:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDGEEQRMKELPLPPK

Query:  MQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSM
        MQQVA++SPPSQI+KSASERKLNHM+SMSIKVPRSLSVVRNHLDEGR RRKE++KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKI+AYHPRA SSM
Subjt:  MQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSM

Query:  SISISRQSSAIDAEALPNPEPK
        SIS+SRQ+SA++AEAL + E K
Subjt:  SISISRQSSAIDAEALPNPEPK

XP_023002698.1 uncharacterized protein LOC111496482 [Cucurbita maxima]2.5e-7073.18Show/hide
Query:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDG--EEQRMKELPLP
        MV SFPTDEN LIHPAISL L+A GM  AIAMIT LCGVRSRR   PSEASS TA D K D N S TTT S A AT P+ G++ +DG   E+ MKELPLP
Subjt:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDG--EEQRMKELPLP

Query:  PKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS
        PKMQQVA+ SPPSQIAKSASER+L HM  M+++VPRS SV R  L+EG  RRKEKMK EE IW KTIILGEKC+V DEEDG+IYEGKGK+ISAYHPR+ S
Subjt:  PKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS

Query:  SMSISISRQSSAIDAEALPN
        SMSISISRQSSAIDAEALP+
Subjt:  SMSISISRQSSAIDAEALPN

TrEMBL top hitse value%identityAlignment
A0A0A0KD46 Uncharacterized protein1.0e-7281.15Show/hide
Query:  MITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDGEEQRMKELPLPPKMQQVANSSPPSQIAKSASERKLNHMKSMSIK
        MITTLCGVRSRRRS PSE SS  A DNK DEN SPTTT +P  A NPSGGE EN+GE   MKELPLPPKMQQVA++SPPSQI+KSASERKLNHM+SMSIK
Subjt:  MITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDGEEQRMKELPLPPKMQQVANSSPPSQIAKSASERKLNHMKSMSIK

Query:  VPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSMSISISRQSSAIDAEALPNPEPK
        VPRSLSVVRNHLDEGR RRKE++KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKI+AYHPRA SSMSIS+SRQ+SA++AEAL + E K
Subjt:  VPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSMSISISRQSSAIDAEALPNPEPK

A0A5A7VC31 Putative transmembrane protein5.3e-9084.38Show/hide
Query:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATD-NKADENASP-TTTPSPATATNPSGGETENDGEEQRMKELPLP
        MVRSFPTD+NPLIHPAISL+LLA GMAAAIAMITTLCGVRSRRRS PSEASSPTAT+ NKA+EN SP TTTPS ATA NPS  ETEN+GE   +KELPLP
Subjt:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATD-NKADENASP-TTTPSPATATNPSGGETENDGEEQRMKELPLP

Query:  PKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS
        PKMQQV +SSPP+QI KSASERKLNHM+SMSIKVPRSLSVVRNHLDEGR RRKEK+KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKI+AYHPRA S
Subjt:  PKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS

Query:  SMSISISRQSSAIDAEALPNPEPK
        SMSIS+SRQ+SA +AEALPN E K
Subjt:  SMSISISRQSSAIDAEALPNPEPK

A0A6A1WQ24 Uncharacterized protein1.1e-3948.47Show/hide
Query:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRS-RRRSPPSEASSPTATDNKADENASPTTT--------PSPATATNPSGGETENDGEEQR
        MVR  PT+E PL HP +S  LLAVG+AAAIA IT LCG R  +R SPPS +S    T  K D +    TT        PSP  A  P+  E     +E +
Subjt:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRS-RRRSPPSEASSPTATDNKADENASPTTT--------PSPATATNPSGGETENDGEEQR

Query:  MKELPLPPKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISA
         +ELPLPP M  +  S    +I KS+S+R L   K++++K+PRSLS+ R    E  ++RK+ +  E+SIW KTIILGEKCKVPDE+D +IY+GKGK+IS 
Subjt:  MKELPLPPKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISA

Query:  YHPRAHSSMSISISRQSSAIDAEALPNPE
        YHP+  S   IS+SR+ S  + EA P PE
Subjt:  YHPRAHSSMSISISRQSSAIDAEALPNPE

A0A6J1KUB9 uncharacterized protein LOC1114964821.2e-7073.18Show/hide
Query:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDG--EEQRMKELPLP
        MV SFPTDEN LIHPAISL L+A GM  AIAMIT LCGVRSRR   PSEASS TA D K D N S TTT S A AT P+ G++ +DG   E+ MKELPLP
Subjt:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDG--EEQRMKELPLP

Query:  PKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS
        PKMQQVA+ SPPSQIAKSASER+L HM  M+++VPRS SV R  L+EG  RRKEKMK EE IW KTIILGEKC+V DEEDG+IYEGKGK+ISAYHPR+ S
Subjt:  PKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS

Query:  SMSISISRQSSAIDAEALPN
        SMSISISRQSSAIDAEALP+
Subjt:  SMSISISRQSSAIDAEALPN

A0A7N2KRH9 Uncharacterized protein1.1e-3447.35Show/hide
Query:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADEN------ASPTTTPSPATATNPSGGETENDGEEQRMKE
        M R  P+DEN LIHP  S  LLA+GM A IAMIT LCGVRSR++S P   SSP    NK +EN      AS T T + + A  P   E  +  ++ ++KE
Subjt:  MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADEN------ASPTTTPSPATATNPSGGETENDGEEQRMKE

Query:  LPLPPKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVR---NHLDEGRHRRKEK-MKGEESIWTKTIILGEKCKVPDEED-GIIYEGKGKKI
        LPLPP M+ +  S   + I KS+SER+L    S+S+K+PRSLS  +   N   E  H++K++ +  E+++W KTIILGEKCKVP E+D  +IY+GKG +I
Subjt:  LPLPPKMQQVANSSPPSQIAKSASERKLNHMKSMSIKVPRSLSVVR---NHLDEGRHRRKEK-MKGEESIWTKTIILGEKCKVPDEED-GIIYEGKGKKI

Query:  SAYHPRAHSSMSISISRQSSAIDAEA
        SAYHP+  S    S+SRQ S  D ++
Subjt:  SAYHPRAHSSMSISISRQSSAIDAEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G26114.1 unknown protein6.1e-0639.76Show/hide
Query:  VVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKIS---AYHPRAHSSMSISISRQSSAIDAEALP
        V++   +E +  RK+K+  + SI    IILGE+C+V D E+G   E + ++++    Y PR+ S  SISISR  S ID  A+P
Subjt:  VVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKIS---AYHPRAHSSMSISISRQSSAIDAEALP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGAAGCTTTCCGACGGATGAGAACCCGTTAATTCATCCGGCGATTTCTCTATACCTTCTGGCGGTCGGAATGGCGGCAGCTATTGCCATGATCACGACGTTATG
CGGTGTTCGATCCAGAAGAAGATCGCCACCGTCCGAAGCTTCGTCTCCGACCGCCACAGACAACAAAGCAGACGAAAACGCTTCCCCAACAACGACACCATCTCCGGCAA
CGGCGACAAACCCATCTGGTGGAGAAACAGAGAACGACGGCGAAGAACAGAGGATGAAAGAACTTCCCCTGCCTCCAAAAATGCAACAAGTGGCTAATTCAAGCCCACCA
AGCCAAATTGCAAAATCAGCATCGGAGAGAAAATTAAACCATATGAAAAGCATGAGCATCAAAGTTCCGAGAAGTCTTTCAGTTGTGAGGAATCATTTGGATGAAGGGAG
ACACAGGAGGAAGGAGAAGATGAAAGGGGAAGAATCGATTTGGACAAAAACAATAATATTAGGAGAAAAATGCAAAGTTCCAGATGAAGAAGATGGAATTATATATGAAG
GAAAAGGGAAGAAGATATCAGCTTATCATCCGAGAGCTCATAGTTCAATGTCGATATCGATTTCAAGGCAAAGTTCTGCCATTGATGCTGAAGCTCTGCCAAACCCAGAA
CCAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGAAGCTTTCCGACGGATGAGAACCCGTTAATTCATCCGGCGATTTCTCTATACCTTCTGGCGGTCGGAATGGCGGCAGCTATTGCCATGATCACGACGTTATG
CGGTGTTCGATCCAGAAGAAGATCGCCACCGTCCGAAGCTTCGTCTCCGACCGCCACAGACAACAAAGCAGACGAAAACGCTTCCCCAACAACGACACCATCTCCGGCAA
CGGCGACAAACCCATCTGGTGGAGAAACAGAGAACGACGGCGAAGAACAGAGGATGAAAGAACTTCCCCTGCCTCCAAAAATGCAACAAGTGGCTAATTCAAGCCCACCA
AGCCAAATTGCAAAATCAGCATCGGAGAGAAAATTAAACCATATGAAAAGCATGAGCATCAAAGTTCCGAGAAGTCTTTCAGTTGTGAGGAATCATTTGGATGAAGGGAG
ACACAGGAGGAAGGAGAAGATGAAAGGGGAAGAATCGATTTGGACAAAAACAATAATATTAGGAGAAAAATGCAAAGTTCCAGATGAAGAAGATGGAATTATATATGAAG
GAAAAGGGAAGAAGATATCAGCTTATCATCCGAGAGCTCATAGTTCAATGTCGATATCGATTTCAAGGCAAAGTTCTGCCATTGATGCTGAAGCTCTGCCAAACCCAGAA
CCAAAATAG
Protein sequenceShow/hide protein sequence
MVRSFPTDENPLIHPAISLYLLAVGMAAAIAMITTLCGVRSRRRSPPSEASSPTATDNKADENASPTTTPSPATATNPSGGETENDGEEQRMKELPLPPKMQQVANSSPP
SQIAKSASERKLNHMKSMSIKVPRSLSVVRNHLDEGRHRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSMSISISRQSSAIDAEALPNPE
PK