; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G008610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G008610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription and mRNA export factor ENY2
Genome locationchr08:17031192..17033663
RNA-Seq ExpressionLsi08G008610
SyntenyLsi08G008610
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0015031 - protein transport (biological process)
GO:0016578 - histone deubiquitination (biological process)
GO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005643 - nuclear pore (cellular component)
GO:0070390 - transcription export complex 2 (cellular component)
GO:0071819 - DUBm complex (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR018783 - Transcription factor, enhancer of yellow 2
IPR038212 - Transcription factor EnY2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020143.1 Transcription and mRNA export factor SUS1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-3497.53Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIR+FLAST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

XP_008445505.1 PREDICTED: transcription and mRNA export factor SUS1 isoform X2 [Cucumis melo]2.4e-3498.77Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLAST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

XP_022951096.1 transcription and mRNA export factor SUS1 [Cucurbita moschata]2.4e-3498.77Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLAST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

XP_023002845.1 transcription and mRNA export factor ENY2 [Cucurbita maxima]5.3e-3497.53Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIR+FLAST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

XP_038884208.1 transcription and mRNA export factor ENY2 [Benincasa hispida]2.4e-3498.77Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLAST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

TrEMBL top hitse value%identityAlignment
A0A0A0KIM7 Transcription and mRNA export factor ENY23.3e-3497.53Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFL ST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

A0A1S3BDR5 Transcription and mRNA export factor ENY21.1e-3498.77Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLAST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

A0A6J1BSW0 Transcription and mRNA export factor ENY23.3e-3497.53Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFL ST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

A0A6J1GGQ4 Transcription and mRNA export factor ENY21.1e-3498.77Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLAST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

A0A6J1KQ41 Transcription and mRNA export factor ENY22.5e-3497.53Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIR+FLAST I
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

SwissProt top hitse value%identityAlignment
Q3ZBJ0 Transcription and mRNA export factor ENY21.0e-2465.17Show/hide
Query:  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLA
        K +  R+A+   LIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDLV  ITPKGRA VPDSVK ELLQRIR+FLA
Subjt:  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLA

Q6DH42 Transcription and mRNA export factor ENY22.7e-2565.17Show/hide
Query:  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLA
        K+S  R+A+   LIE GE+ERLKELLR +LIECGW+D++KALC+  +++KG  NV+V+DLV  +TPKGRA VPDSVK ELLQRIR+FLA
Subjt:  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLA

Q6NQ54 Transcription and mRNA export factor ENY21.9e-2667.9Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        L+ESGEKE L EL+R+RL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGRASVPDSVKAELL RI++F+ S  +
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

Q9JIX0 Transcription and mRNA export factor ENY21.0e-2465.17Show/hide
Query:  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLA
        K +  R+A+   LIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDLV  ITPKGRA VPDSVK ELLQRIR+FLA
Subjt:  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLA

Q9NPA8 Transcription and mRNA export factor ENY21.0e-2465.17Show/hide
Query:  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLA
        K +  R+A+   LIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDLV  ITPKGRA VPDSVK ELLQRIR+FLA
Subjt:  KQSTSRSAV-YSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLA

Arabidopsis top hitse value%identityAlignment
AT3G27100.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).1.3e-2767.9Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        L+ESGEKE L EL+R+RL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGRASVPDSVKAELL RI++F+ S  +
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI

AT3G27100.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).8.7e-1951.85Show/hide
Query:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI
        L+ESGEKE L EL+R+RL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGR  + +     +   + S L + T+
Subjt:  LIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTAATTCTTCAAGCTTCACTCCATGGCTATAATTGCCATGCCCTAATTTCTGCTGCGACAGGAGGGCTTCCATTAATCGGCCTCCGACGCCTGAACCGGAGGAT
GATCGAGAACACCACCCCACTTTTCAAGAAACAATCAACATCAAGGTCTGCAGTTTATTCGCTGATTGAAAGTGGCGAAAAAGAGCGGTTGAAAGAGCTTTTGAGAGAGA
GGCTCATTGAATGTGGCTGGAAAGATGAGATGAAAGCACTTTGCAGGGCATATGTAAGGAAGAAAGGAAGGAACAATGTTAGTGTTGACGACCTTGTGCAGGTCATTACT
CCGAAAGGCCGAGCCTCAGTTCCAGATTCAGTGAAAGCCGAGCTGCTGCAGCGCATCCGATCTTTCCTTGCATCAACAACCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTAATTCTTCAAGCTTCACTCCATGGCTATAATTGCCATGCCCTAATTTCTGCTGCGACAGGAGGGCTTCCATTAATCGGCCTCCGACGCCTGAACCGGAGGAT
GATCGAGAACACCACCCCACTTTTCAAGAAACAATCAACATCAAGGTCTGCAGTTTATTCGCTGATTGAAAGTGGCGAAAAAGAGCGGTTGAAAGAGCTTTTGAGAGAGA
GGCTCATTGAATGTGGCTGGAAAGATGAGATGAAAGCACTTTGCAGGGCATATGTAAGGAAGAAAGGAAGGAACAATGTTAGTGTTGACGACCTTGTGCAGGTCATTACT
CCGAAAGGCCGAGCCTCAGTTCCAGATTCAGTGAAAGCCGAGCTGCTGCAGCGCATCCGATCTTTCCTTGCATCAACAACCATCTGACATACACGATATGACTGCAAGCT
GCCAAAAAGTTATAAGGAATGTCGCATTGTGTAAGCTCGCTGTCAACAAAATTCTGGTTGGTGAGTGTTTTGTTGTAGAATGCATGTAAAAAGCTAGCTGTATGAGATTT
ATTTAATACTCTCATGATGACAAGTCTGTTTTTACCGAAAATTTGGTCAGTTGTAACTCTTGATTGGGTCTATTTTGATGGTATAATTATATATTTCGACTTGTTCAA
Protein sequenceShow/hide protein sequence
MELILQASLHGYNCHALISAATGGLPLIGLRRLNRRMIENTTPLFKKQSTSRSAVYSLIESGEKERLKELLRERLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVIT
PKGRASVPDSVKAELLQRIRSFLASTTI