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Lsi08G009060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G009060
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMADS-box transcription factor
Genome locationchr08:17434534..17442737
RNA-Seq ExpressionLsi08G009060
SyntenyLsi08G009060
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR002487 - Transcription factor, K-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016899976.1 PREDICTED: MADS-box protein CMB1 [Cucumis melo]6.9e-3661.69Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE
        MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA                                              ERWYQEYLKLKAE
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        VEALQYSQRRF+GEELDDLE+KELDQLEIQLEMSLKQIRSTK   + +   +L+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

XP_022131973.1 truncated transcription factor CAULIFLOWER A [Momordica charantia]2.0e-3561.04Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------------------------------------------RWYQEYLKLKAE
        MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE                                              RWYQEYLKLKAE
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------------------------------------------RWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        VE+LQ+SQRRF+GEELDDLETKELDQLEIQLEMSLKQIRS KS  + +   +L+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

XP_031742477.1 MADS-box protein CMB1 isoform X1 [Cucumis sativus]2.4e-3662.34Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE
        MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA                                              ERWYQEYLKLKAE
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        VEALQYSQRRF+GEELDDLETKELDQLEIQLEMSLKQIRSTK   + +   +L+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

XP_031742478.1 MADS-box protein CMB1 isoform X2 [Cucumis sativus]5.3e-3666.9Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE
        MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA                                              ERWYQEYLKLKAE
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTK
        VEALQYSQRRF+GEELDDLETKELDQLEIQLEMSLKQIRSTK
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTK

XP_038886104.1 MADS-box protein CMB1 [Benincasa hispida]1.8e-3662.34Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE
        MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA                                              ERWYQEYLKLKAE
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        VE LQYSQRRF+GEELDDLETKELDQLEIQLEMSLKQIRSTKS  + +   +L+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

TrEMBL top hitse value%identityAlignment
A0A1S4DVG4 MADS-box protein CMB13.3e-3661.69Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE
        MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA                                              ERWYQEYLKLKAE
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        VEALQYSQRRF+GEELDDLE+KELDQLEIQLEMSLKQIRSTK   + +   +L+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

A0A2P5E973 MADS-box transcription factor7.9e-3067.59Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAERWYQEYLKLKAEVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAI
        MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE  Y+EYLKLK   E+LQ +QR  +GE+L  L TKEL+Q+E QLE SLKQ+RSTK+  +
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAERWYQEYLKLKAEVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAI

Query:  CNTADNLR
         +   +L+
Subjt:  CNTADNLR

A0A6J1BUY9 truncated transcription factor CAULIFLOWER A9.7e-3661.04Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------------------------------------------RWYQEYLKLKAE
        MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE                                              RWYQEYLKLKAE
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------------------------------------------RWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        VE+LQ+SQRRF+GEELDDLETKELDQLEIQLEMSLKQIRS KS  + +   +L+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

A0A6J1GJJ3 truncated transcription factor CAULIFLOWER A6.5e-3255.84Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE
        MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA                                              E+WY+EYLKLK E
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        VE LQ+SQRR +GEEL+DLETKELDQLEIQLE SLKQIR TK+  + +    L+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

A0A6J1KSQ8 truncated transcription factor CAULIFLOWER A1.0e-3256.49Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE
        MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA                                              E+WY+EYLKLKAE
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        VE LQ+SQR+ +GEEL+DLETKELDQLEIQLEMSLKQIR TK+ ++      L+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

SwissProt top hitse value%identityAlignment
Q03489 Agamous-like MADS-box protein AGL9 homolog5.1e-2648.72Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------RWY--------------------------------------QEYLKLK
        MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE          + Y                                      QEYLKLK
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------RWY--------------------------------------QEYLKLK

Query:  AEVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        A  EALQ SQR  +GE+L  L +KEL+ LE QL+MSLKQIRST++  + +   +L+
Subjt:  AEVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

Q39685 MADS-box protein CMB16.7e-2651.05Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE
        MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDA                                              E  YQEYLKLKA+
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA----------------------------------------------ERWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKS
        V+ LQ S R  +GE+L +L TKEL+QLE QL+ SL+QIRS K+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKS

Q7Y040 MADS-box protein EJ26.7e-2651.75Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------------------------------------------RWYQEYLKLKAE
        MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE                                                Y EYL+LKA 
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------------------------------------------RWYQEYLKLKAE

Query:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKS
        VE LQ SQR F+GE+L  L +K+L+QLE QLE SLKQIRS K+
Subjt:  VEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKS

Q8LLR0 Agamous-like MADS-box protein MADS48.7e-2648.72Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------RWY--------------------------------------QEYLKLK
        MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE          + Y                                      QEYLKLK
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE----------RWY--------------------------------------QEYLKLK

Query:  AEVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        A  EALQ SQR  +GE+L  L TKEL+ LE QL++SLKQIRST++  + +   +L+
Subjt:  AEVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

Q8LLR2 Agamous-like MADS-box protein MADS22.3e-2647.74Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE-----------------------------------------------RWYQEYLKLKA
        MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE                                                 Y+EYLKLK+
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE-----------------------------------------------RWYQEYLKLKA

Query:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
        + E+LQ +QR  +GE+L  L TKEL+QLE QLE SLKQ+RSTK+  + +   +L+
Subjt:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

Arabidopsis top hitse value%identityAlignment
AT2G03710.1 K-box region and MADS-box transcription factor family protein1.1e-2645.16Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE-----------------------------------------------RWYQEYLKLKA
        MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE                                                 YQ+YLKLK+
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE-----------------------------------------------RWYQEYLKLKA

Query:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
         VE LQ+SQR  +GEEL +++  EL+ LE Q++ SL+QIRSTK+ ++ +   +L+
Subjt:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

AT2G03710.2 K-box region and MADS-box transcription factor family protein1.1e-2645.16Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE-----------------------------------------------RWYQEYLKLKA
        MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE                                                 YQ+YLKLK+
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE-----------------------------------------------RWYQEYLKLKA

Query:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
         VE LQ+SQR  +GEEL +++  EL+ LE Q++ SL+QIRSTK+ ++ +   +L+
Subjt:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

AT2G03710.3 K-box region and MADS-box transcription factor family protein1.1e-2645.16Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE-----------------------------------------------RWYQEYLKLKA
        MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE                                                 YQ+YLKLK+
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAE-----------------------------------------------RWYQEYLKLKA

Query:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
         VE LQ+SQR  +GEEL +++  EL+ LE Q++ SL+QIRSTK+ ++ +   +L+
Subjt:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

AT5G15800.1 K-box region and MADS-box transcription factor family protein3.4e-2545.81Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA-----------------------------------------------ERWYQEYLKLKA
        MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDA                                               E  Y+EYLKLK 
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA-----------------------------------------------ERWYQEYLKLKA

Query:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
          E LQ  QR  +GE+L  L +KEL+QLE QL+ SLKQ+RS K+  + +   +L+
Subjt:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR

AT5G15800.2 K-box region and MADS-box transcription factor family protein3.4e-2545.81Show/hide
Query:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA-----------------------------------------------ERWYQEYLKLKA
        MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDA                                               E  Y+EYLKLK 
Subjt:  MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDA-----------------------------------------------ERWYQEYLKLKA

Query:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR
          E LQ  QR  +GE+L  L +KEL+QLE QL+ SLKQ+RS K+  + +   +L+
Subjt:  EVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGAGGGAGGGTAGAGCTGAAGAAGATAGAAAACAAAATAAATAGACAAGTTACCTTCACAAAGAGAAGAAATGGACTTCTTAAAAAGGCTTATGAACTCTCCAT
TTTGTGTGATGCTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAGTATTCACAGAGACGATTTATTGGGGAAGAATTGGATGATTTAG
AGACAAAGGAACTCGACCAACTGGAAATTCAATTGGAAATGTCTCTAAAGCAAATCAGATCTACTAAGAGCCCAGCAATTTGCAATACTGCAGACAACCTGAGGCCTTTC
TTCAACTTTGCTTCATTGTCAATTTTGTTTTCAGTTTTAGCCACAGTGTGTACCATG
mRNA sequenceShow/hide mRNA sequence
AAAGAGAGAAAAGAAAAGAATGGGGAGAGGGAGGGTAGAGCTGAAGAAGATAGAAAACAAAATAAATAGACAAGTTACCTTCACAAAGAGAAGAAATGGACTTCTTAAAA
AGGCTTATGAACTCTCCATTTTGTGTGATGCTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAGTATTCACAGAGACGATTTATTGGG
GAAGAATTGGATGATTTAGAGACAAAGGAACTCGACCAACTGGAAATTCAATTGGAAATGTCTCTAAAGCAAATCAGATCTACTAAGAGCCCAGCAATTTGCAATACTGC
AGACAACCTGAGGCCTTTCTTCAACTTTGCTTCATTGTCAATTTTGTTTTCAGTTTTAGCCACAGTGTGTACCATG
Protein sequenceShow/hide protein sequence
MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAERWYQEYLKLKAEVEALQYSQRRFIGEELDDLETKELDQLEIQLEMSLKQIRSTKSPAICNTADNLRPF
FNFASLSILFSVLATVCTM