CuGenDBv2

Gene ID	Lsi08G009700
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	methyl-CpG-binding domain-containing protein 8-like
Genome location	chr08:18177101..18177766
RNA-Seq Expression	Lsi08G009700
Synteny	Lsi08G009700
Gene Ontology terms	NA
InterPro domains	IPR037472 - Methyl-CpG-binding domain-containing protein 8

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152634.1 methyl-CpG-binding domain-containing protein 8 isoform X1 [Cucumis sativus]

2.6e-99

90.95

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF  SSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQSPDRLDTESAQIV LFNQLFVGDSHC VND+Y DGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS  P+KRRRGRPRKDSNRF QSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKP---AAAEEEIVM
        EFKSGCDKP   AAA+EEIVM
Subjt:  EFKSGCDKP---AAAEEEIVM

XP_004152635.1 methyl-CpG-binding domain-containing protein 8 isoform X2 [Cucumis sativus]

8.0e-101

91.07

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF  SSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQSPDRLDTESAQIV LFNQLFVGDSHC VND+Y DGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS  P+KRRRGRPRKDSNRF QSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKP---AAAEEEIVMVML
        EFKSGCDKP   AAA+EEIVMVML
Subjt:  EFKSGCDKP---AAAEEEIVMVML

XP_008444843.1 PREDICTED: methyl-CpG-binding domain-containing protein 8 isoform X2 [Cucumis melo]

5.2e-100

91.48

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF  SSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQS DRLDTESAQIV LFNQLFVGDSHCAVND++ DGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS+AP+KRRRGRPRKDSNRF QSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKP--AAAEEEIVMVML
        EFKSG DKP  AAAEEEIVMVML
Subjt:  EFKSGCDKP--AAAEEEIVMVML

XP_038885025.1 methyl-CpG-binding domain-containing protein 8 isoform X1 [Benincasa hispida]

5.4e-105

95.07

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRF SSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQSPDRLDTESAQIVTLF QLFVGD HCAVND+Y DGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAP+KRRRGRPRKDSNRFAQSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKPAAA-----EEEIVM
        EFKSGCDKPAAA     EEEIVM
Subjt:  EFKSGCDKPAAA-----EEEIVM

XP_038885026.1 methyl-CpG-binding domain-containing protein 8 isoform X2 [Benincasa hispida]

1.7e-106

95.13

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRF SSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQSPDRLDTESAQIVTLF QLFVGD HCAVND+Y DGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAP+KRRRGRPRKDSNRFAQSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKPAAA-----EEEIVMVML
        EFKSGCDKPAAA     EEEIVMVML
Subjt:  EFKSGCDKPAAA-----EEEIVMVML

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPH8 Uncharacterized protein

3.9e-101

91.07

Show/hide

Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF  SSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQSPDRLDTESAQIV LFNQLFVGDSHC VND+Y DGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS  P+KRRRGRPRKDSNRF QSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKP---AAAEEEIVMVML
        EFKSGCDKP   AAA+EEIVMVML
Subjt:  EFKSGCDKP---AAAEEEIVMVML

A0A1S3BAU3 methyl-CpG-binding domain-containing protein 8 isoform X2

2.5e-100

91.48

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF  SSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQS DRLDTESAQIV LFNQLFVGDSHCAVND++ DGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS+AP+KRRRGRPRKDSNRF QSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKP--AAAEEEIVMVML
        EFKSG DKP  AAAEEEIVMVML
Subjt:  EFKSGCDKP--AAAEEEIVMVML

A0A1S3BC64 methyl-CpG-binding domain-containing protein 8 isoform X1

8.1e-99

91.36

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF  SSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQS DRLDTESAQIV LFNQLFVGDSHCAVND++ DGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS+AP+KRRRGRPRKDSNRF QSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKP--AAAEEEIVM
        EFKSG DKP  AAAEEEIVM
Subjt:  EFKSGCDKP--AAAEEEIVM

A0A5A7VH26 Methyl-CpG-binding domain-containing protein 8 isoform X2

2.5e-100

91.48

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF  SSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQS DRLDTESAQIV LFNQLFVGDSHCAVND++ DGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS+AP+KRRRGRPRKDSNRF QSNGNAAP
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKP--AAAEEEIVMVML
        EFKSG DKP  AAAEEEIVMVML
Subjt:  EFKSGCDKP--AAAEEEIVMVML

A0A6J1BS27 methyl-CpG-binding domain-containing protein 8 isoform X2

7.8e-94

85.97

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Query:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST
        MASTTMVASPSN+SFRMN LPIIDLRLLSQSELYCLSRF    SSSSSSTSQSN++DDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQF SSSSSS 
Subjt:  MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSST

Query:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP
        IRPQSP+RLD ESA+I+TLF QLFVGDSHC V+++Y D DEDLVL+NHIYDESVPDSSYAIFQSIPVDIIDSSYAP+KRRRGRPRKDSNRF QSNGNA P
Subjt:  IRPQSPDRLDTESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAP

Query:  EFKSGCDKPAAAEEEIVMVML
          KSGC+K  A EEEIVMVML
Subjt:  EFKSGCDKPAAAEEEIVMVML

SwissProt top hits

e value

%identity

Alignment

Q9LME6 Methyl-CpG-binding domain-containing protein 8

8.8e-18

44.89

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Query:  LPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTL
        LP+ID RLLSQSEL  LS+ SS S SSS+S + S   DD L PKIDRSVFNESAGSRKQT+ RLRLA R PQ      S   + Q  D    E  Q+ +L
Subjt:  LPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTL

Query:  FNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYAPVKRRRGRPRKDSN
           LF  DS+ +  +   +G+E+L       +  +  +SY ++Q   +D I       +S   +KR+RGRPRK  N
Subjt:  FNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYAPVKRRRGRPRKDSN

Arabidopsis top hits

e value

%identity

Alignment

AT1G22310.2 methyl-CPG-binding domain 8

6.2e-19

44.89

Show/hide

Query:  LPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTL
        LP+ID RLLSQSEL  LS+ SS S SSS+S + S   DD L PKIDRSVFNESAGSRKQT+ RLRLA R PQ      S   + Q  D    E  Q+ +L
Subjt:  LPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTL

Query:  FNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYAPVKRRRGRPRKDSN
           LF  DS+ +  +   +G+E+L       +  +  +SY ++Q   +D I       +S   +KR+RGRPRK  N
Subjt:  FNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYAPVKRRRGRPRKDSN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAATGATAGTTTCCGCATGAATCCGCTTCCGATCATAGATCTCCGTCTCCTCTCCCAATCCGAGCTCTATTGTCTTTC
TCGTTTCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCAACCTCCCAATCCAACAACGAAGATGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCG
GTAGCCGAAAACAAACCTATTCTCGCCTCCGTTTAGCCCCTCGCAAACCCCAATTTTCTTCCTCTTCATCCTCCTCCACAATTCGCCCTCAATCCCCCGACCGCCTAGAT
ACAGAGAGCGCTCAAATTGTTACTCTATTTAACCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGATAACTACGCCGACGGAGATGAGGACCTGGTACTTGTTAA
CCACATTTACGATGAATCGGTACCTGATTCTTCCTACGCTATTTTCCAGAGTATTCCTGTTGATATTATTGATAGCAGTTACGCCCCGGTTAAGCGGCGGAGAGGGCGAC
CGCGGAAGGATAGCAATCGGTTTGCTCAGAGTAATGGAAATGCGGCTCCGGAATTCAAAAGCGGATGCGATAAACCGGCAGCGGCGGAGGAGGAGATCGTAATGGTAATG
CTGTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLD
TESAQIVTLFNQLFVGDSHCAVNDNYADGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPVKRRRGRPRKDSNRFAQSNGNAAPEFKSGCDKPAAAEEEIVMVM
L

Lsi08G009700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome