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Lsi08G010160 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G010160
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGATA transcription factor 24-like isoform X1
Genome locationchr08:18732081..18732937
RNA-Seq ExpressionLsi08G010160
SyntenyLsi08G010160
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR010399 - Tify domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065102.1 GATA transcription factor 24-like isoform X1 [Cucumis melo var. makuwa]1.7e-4093.94Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL
        MAAANPQPLQARPFQEHVQVP+MMGDDDGEYEDGGGGG GGGGGDVMDD EEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKV   LL
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL

KAG7020257.1 GATA transcription factor 24 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4188.18Show/hide
Query:  VRAFEKLMAAANPQPLQARPFQEHVQVPTMMGDDDGEYED----GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAV
        VRAF+K MAAANPQPLQARPFQEHVQVP MMGDDDGEYED    GGGGG GGGGGDVMDD EEAHMTSVSVAN GGLVMASRTSELTLSFEGEVYVFPAV
Subjt:  VRAFEKLMAAANPQPLQARPFQEHVQVPTMMGDDDGEYED----GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAV

Query:  TPEKVPIRLL
        TPEKV   LL
Subjt:  TPEKVPIRLL

XP_008444908.1 PREDICTED: GATA transcription factor 24-like isoform X1 [Cucumis melo]2.5e-3991.92Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL
        MAAANPQPLQARPFQEHVQVP+MMGDDDGEYEDGGG   GGGGGDVMDD EEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKV   LL
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL

XP_023538546.1 GATA transcription factor 19-like isoform X1 [Cucurbita pepo subsp. pepo]1.9e-3993Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED-GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL
        MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED GGGGG GGGGGDVMDD EEAHMTSVSVAN GGLVMASRTSELTLSFEGEVYVFPAVTPEKV   LL
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED-GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL

XP_023538549.1 GATA transcription factor 24-like isoform X2 [Cucurbita pepo subsp. pepo]1.9e-3993Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED-GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL
        MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED GGGGG GGGGGDVMDD EEAHMTSVSVAN GGLVMASRTSELTLSFEGEVYVFPAVTPEKV   LL
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED-GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL

TrEMBL top hitse value%identityAlignment
A0A1S3BAZ6 GATA transcription factor 24-like isoform X11.2e-3991.92Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL
        MAAANPQPLQARPFQEHVQVP+MMGDDDGEYEDGGG   GGGGGDVMDD EEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKV   LL
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL

A0A1S3BBG6 GATA transcription factor 24-like isoform X21.2e-3991.92Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL
        MAAANPQPLQARPFQEHVQVP+MMGDDDGEYEDGGG   GGGGGDVMDD EEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKV   LL
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL

A0A5A7V9V2 GATA transcription factor 24-like isoform X18.3e-4193.94Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL
        MAAANPQPLQARPFQEHVQVP+MMGDDDGEYEDGGGGG GGGGGDVMDD EEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKV   LL
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIRLL

A0A6J1KJV5 GATA transcription factor 19-like isoform X33.9e-3889.22Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED---GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIR
        MAAANPQPLQARPFQEHVQVP+MMGDDDGEYED   GGGGG GGGGGDVMDD EEA MTSVSVAN GGLVMASRTSELTLSFEGEVYVFPAVTPEKV   
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED---GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIR

Query:  LL
        LL
Subjt:  LL

A0A6J1KRT3 GATA transcription factor 19-like isoform X13.9e-3889.22Show/hide
Query:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED---GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIR
        MAAANPQPLQARPFQEHVQVP+MMGDDDGEYED   GGGGG GGGGGDVMDD EEA MTSVSVAN GGLVMASRTSELTLSFEGEVYVFPAVTPEKV   
Subjt:  MAAANPQPLQARPFQEHVQVPTMMGDDDGEYED---GGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVPIR

Query:  LL
        LL
Subjt:  LL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTTCTTCGAGCTCGAATTTTCGATTATGGATTTTCGGAATTTCATGGAATTCTCCATCTTTACCCCATGAAGCTGGTTGACGTTAGGGCTTTCGAGAAGTTGAT
GGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGCG
GCTGCGGCGGCGGCGGCGGCGATGTTATGGATGATGCCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCAAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAA
CTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACCTATTCGCCTTTTGTCTGGCATTTCTGTTATAATTATGTTTAATTTGAA
CAAGCTGGAGTTGTTGAGACTTTTCATGAATACGAACTCGTGTCTTTATGCTACTTTATATTCTACTTTTCATGAACTCGTGTCTGAAGTTATTCAAGACAGGCTACAGT
AG
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTTCTTCGAGCTCGAATTTTCGATTATGGATTTTCGGAATTTCATGGAATTCTCCATCTTTACCCCATGAAGCTGGTTGACGTTAGGGCTTTCGAGAAGTTGAT
GGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGCG
GCTGCGGCGGCGGCGGCGGCGATGTTATGGATGATGCCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCAAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAA
CTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACCTATTCGCCTTTTGTCTGGCATTTCTGTTATAATTATGTTTAATTTGAA
CAAGCTGGAGTTGTTGAGACTTTTCATGAATACGAACTCGTGTCTTTATGCTACTTTATATTCTACTTTTCATGAACTCGTGTCTGAAGTTATTCAAGACAGGCTACAGT
AG
Protein sequenceShow/hide protein sequence
MSVLRARIFDYGFSEFHGILHLYPMKLVDVRAFEKLMAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGCGGGGGDVMDDAEEAHMTSVSVANHGGLVMASRTSE
LTLSFEGEVYVFPAVTPEKVPIRLLSGISVIIMFNLNKLELLRLFMNTNSCLYATLYSTFHELVSEVIQDRLQ