CuGenDBv2

Gene ID	Lsi08G010190
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	TPR_REGION domain-containing protein
Genome location	chr08:18759884..18760519
RNA-Seq Expression	Lsi08G010190
Synteny	Lsi08G010190
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152601.1 uncharacterized protein LOC101214199 [Cucumis sativus]

6.3e-95

96.21

Show/hide

Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD 
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPLVAKSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE KKLR EA KAYEE+LNIEPRLSN
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

XP_008444918.1 PREDICTED: uncharacterized protein LOC103488119 [Cucumis melo]

1.3e-95

96.21

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Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD+
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPLVAKSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE+KKLR EA KAYEE+LNIEPRLSN
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

XP_022951869.1 uncharacterized protein LOC111454602 [Cucurbita moschata]

5.0e-92

92.89

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Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPL AKSLS+EERGDAL KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE+KKLRGEA KAYEE+LNIEPRLS 
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

XP_023537835.1 uncharacterized protein LOC111798743 [Cucurbita pepo subsp. pepo]

1.7e-92

93.36

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Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPL AKSLS+EERGDAL KRAELKMSTNRRA+VDSALADLTESVTLSQNAN+Y WLGKCYE+KKLRGEA KAYEE+LNIEPRLS 
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

XP_038884950.1 uncharacterized protein LOC120075535 [Benincasa hispida]

3.9e-97

97.63

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Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MVTDILLQI LILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPLVAKSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEA KAYEE+LNIEPRLSN
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPL8 TPR_REGION domain-containing protein

3.0e-95

96.21

Show/hide

Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD 
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPLVAKSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE KKLR EA KAYEE+LNIEPRLSN
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

A0A1S3BC86 uncharacterized protein LOC103488119

6.1e-96

96.21

Show/hide

Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD+
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPLVAKSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE+KKLR EA KAYEE+LNIEPRLSN
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

A0A5A7VBU3 TPR domain protein

6.1e-96

96.21

Show/hide

Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD+
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPLVAKSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE+KKLR EA KAYEE+LNIEPRLSN
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

A0A6J1GK03 uncharacterized protein LOC111454602

2.4e-92

92.89

Show/hide

Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPL AKSLS+EERGDAL KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE+KKLRGEA KAYEE+LNIEPRLS 
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

A0A6J1KRQ5 uncharacterized protein LOC111496615

3.1e-92

92.42

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Query:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI
        MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN
        QGFKTSALESLDTALSPL AKSLS+EERGDAL KRAELKMSTNRRA+VDSA+ADLTESVTLSQNAN+Y WLGKCYE+KKLRGEA KAYEE+LNIEPRLS 
Subjt:  QGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSN

Query:  AREALERLSSS
        AREALERLS+S
Subjt:  AREALERLSSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G65520.1 Tetratricopeptide repeat (TPR)-like superfamily protein

1.7e-34

43.78

Show/hide

Query:  TDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQG
        T+ ++Q A++++ +VMF A+  + QR   K R + R+ ++++R  ++ ++LLARAR+ P +S + SLA+  + EAD  IA+ P DAA HI++ALALD+ G
Subjt:  TDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQG

Query:  FKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTL---SQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLS
          TSAL+S D AL+    KSLS  ER DAL KRAE+K++ NRR  +DSA+ DL E+V L   +  A  +  LG+CYE K L+ +A  A+ E+L  +P   
Subjt:  FKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTL---SQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLS

Query:  N
        N
Subjt:  N

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTGACCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCCTCGCTATGCACAACATTCCACAGAGATACTTTGCCAAGCTCCGATTGCGCTT
TCGATCTGACGTCGAATCCAAACGCCACTTCGTGAGAGGGGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCCTCGGCCACTTCGTTAGCGGAAGAAGTCG
TAGCGGAAGCTGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAAGCTTTGGCTCTCGACATTCAAGGATTCAAAACCTCTGCTCTGGAATCG
CTCGATACGGCTCTGTCGCCGCTCGTCGCTAAGTCGCTCAGCGATGAGGAGCGAGGCGACGCGTTGTCCAAGCGAGCTGAGTTGAAGATGTCCACGAACCGGCGAGCCCT
AGTTGACTCGGCTTTGGCTGACTTGACCGAGTCCGTGACACTGAGTCAGAATGCAAATTCCTACTATTGGTTGGGGAAATGCTACGAGATCAAGAAACTGAGAGGAGAGG
CCACGAAAGCATATGAAGAATCTTTGAACATCGAACCACGATTATCCAACGCTAGGGAGGCATTGGAACGTCTATCATCATCGTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALES
LDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSNAREALERLSSS

Lsi08G010190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome