; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G010210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G010210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationchr08:18772817..18773395
RNA-Seq ExpressionLsi08G010210
SyntenyLsi08G010210
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065096.1 Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa]1.6e-8998.79Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH

KAG7020253.1 hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-7991.93Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFF
        GWSEPHGPGFQSDD++DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGKSCFF
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFF

XP_004152600.1 uncharacterized protein LOC101213956 [Cucumis sativus]5.0e-8398.71Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

XP_008444920.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo]5.0e-8398.06Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

XP_038886443.1 uncharacterized protein LOC120076637 [Benincasa hispida]2.9e-8399.35Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

TrEMBL top hitse value%identityAlignment
A0A0A0LLD0 Uncharacterized protein2.4e-8398.71Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

A0A1S3BB05 uncharacterized protein LOC1034881212.4e-8398.06Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

A0A5A7VFJ3 Ribosomal RNA small subunit methyltransferase A7.8e-9098.79Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLH

A0A6J1HCV2 uncharacterized protein LOC111462457 isoform X11.8e-7893.04Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKS
        GWSEPHGPGFQSDDDSDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +S
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKS

A0A6J1KDE3 uncharacterized protein LOC111492231 isoform X11.8e-7893.04Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKS
        GWSEPHGPGFQSDDDSDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +S
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein7.1e-1136.67Show/hide
Query:  RETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVD
        +ET+ LKFP       +  +R  KRK    E         + +V  DG           +WS+GW+EPHGP FQSDD+ +D  F VLVPCY R   +   
Subjt:  RETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVD

Query:  ETKNSILSAVGNINDSFSAG
           N +LSAV N+ +    G
Subjt:  ETKNSILSAVGNINDSFSAG

AT4G38060.2 unknown protein1.2e-1038.05Show/hide
Query:  RETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVD
        +ET+ LKFP       +  +R  KRK    E         + +V  DG           +WS+GW+EPHGP FQSDD+ +D  F VLVPCY R   +   
Subjt:  RETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVD

Query:  ETKNSILSAVGNI
           N +LSAV N+
Subjt:  ETKNSILSAVGNI

AT5G65480.1 unknown protein8.1e-1536.91Show/hide
Query:  MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDD
        M+V+FP+L  WL  G   K +E + S   G S+L+ SL    ++T T K       + SSS ++ KR W  R       E D +      G V   E DD
Subjt:  MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDD

Query:  SDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILS
         +WSIGW EPHGPGF+++DD    F VLVP Y ++ +   ++  N   S
Subjt:  SDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAA
CCGGGAAACAGATACTCTAAAATTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATA
GGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTC
CAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGG
GAACATCAATGATAGCTTTTCTGCTGGTAAGAGTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCGTGTTAGTTATTGCTTTTGCCTCCCAAAATATTCTTTCGG
TCCTCTTACATAAATGGCGAACTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAA
CCGGGAAACAGATACTCTAAAATTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATA
GGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTC
CAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGG
GAACATCAATGATAGCTTTTCTGCTGGTAAGAGTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCGTGTTAGTTATTGCTTTTGCCTCCCAAAATATTCTTTCGG
TCCTCTTACATAAATGGCGAACTCAATAA
Protein sequenceShow/hide protein sequence
MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGF
QSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLHFDWCCVLVIAFASQNILSVLLHKWRTQ