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Lsi08G010660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G010660
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPolynucleotide adenylyltransferase
Genome locationchr08:19261865..19263212
RNA-Seq ExpressionLsi08G010660
SyntenyLsi08G010660
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0031123 - RNA 3'-end processing (biological process)
GO:0043631 - RNA polyadenylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004652 - polynucleotide adenylyltransferase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065055.1 nuclear poly(A) polymerase 4 isoform X3 [Cucumis melo var. makuwa]6.2e-2641.9Show/hide
Query:  GNDSRMDPDLALENGSVVTGSVSQNGQ------------------------------------SKELETES---------------EPQGMTCGGEVLDA
        GNDSR DPDLAL+NGSVVTG VSQNG                                     SK L  +S                 + M C GEVLDA
Subjt:  GNDSRMDPDLALENGSVVTGSVSQNGQ------------------------------------SKELETES---------------EPQGMTCGGEVLDA

Query:  GWVGRSGGPAFGKWCSSCMNLRTWGGVAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKTLNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAH
        GWV RSG                                   LL   MGI+ S+VGEKTL +CM+CFEESGA H RCL  E SQL IFRRWEIL EGTA 
Subjt:  GWVGRSGGPAFGKWCSSCMNLRTWGGVAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKTLNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAH

Query:  GVVFGANLVY
         VV GAN +Y
Subjt:  GVVFGANLVY

KGN62795.1 hypothetical protein Csa_022232 [Cucumis sativus]6.5e-1552.94Show/hide
Query:  VAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKTLNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAHGVVFGANLVYT
        +AW  G+ + S  +   + L+ G  +     K L  CM+CFEESGAFH RCL +E SQL IFRRWEIL EGTAH VV G N +YT
Subjt:  VAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKTLNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAHGVVFGANLVYT

XP_038884464.1 nuclear poly(A) polymerase 4-like isoform X1 [Benincasa hispida]2.5e-0678.05Show/hide
Query:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT
        GNDSR DPDLALENGSVVTG VSQNGQSKELE +   Q +T
Subjt:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT

XP_038884466.1 nuclear poly(A) polymerase 4-like isoform X2 [Benincasa hispida]1.6e-0593.75Show/hide
Query:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELE
        GNDSR DPDLALENGSVVTG VSQNGQSKELE
Subjt:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELE

XP_038884467.1 nuclear poly(A) polymerase 4-like isoform X3 [Benincasa hispida]2.5e-0678.05Show/hide
Query:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT
        GNDSR DPDLALENGSVVTG VSQNGQSKELE +   Q +T
Subjt:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT

TrEMBL top hitse value%identityAlignment
A0A0A0LLH3 Uncharacterized protein3.1e-1552.94Show/hide
Query:  VAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKTLNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAHGVVFGANLVYT
        +AW  G+ + S  +   + L+ G  +     K L  CM+CFEESGAFH RCL +E SQL IFRRWEIL EGTAH VV G N +YT
Subjt:  VAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKTLNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAHGVVFGANLVYT

A0A0A0LP30 Polynucleotide adenylyltransferase2.2e-0573.17Show/hide
Query:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT
        GNDSR DPDLAL+NGSVVTG VSQNGQSK LE +   Q +T
Subjt:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT

A0A1S3BBN8 Polynucleotide adenylyltransferase2.2e-0573.17Show/hide
Query:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT
        GNDSR DPDLAL+NGSVVTG VSQNGQSK LE +   Q +T
Subjt:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT

A0A1S3BCI7 Polynucleotide adenylyltransferase2.2e-0573.17Show/hide
Query:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT
        GNDSR DPDLAL+NGSVVTG VSQNGQSK LE +   Q +T
Subjt:  GNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMT

A0A5A7VGN2 Polynucleotide adenylyltransferase3.0e-2641.9Show/hide
Query:  GNDSRMDPDLALENGSVVTGSVSQNGQ------------------------------------SKELETES---------------EPQGMTCGGEVLDA
        GNDSR DPDLAL+NGSVVTG VSQNG                                     SK L  +S                 + M C GEVLDA
Subjt:  GNDSRMDPDLALENGSVVTGSVSQNGQ------------------------------------SKELETES---------------EPQGMTCGGEVLDA

Query:  GWVGRSGGPAFGKWCSSCMNLRTWGGVAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKTLNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAH
        GWV RSG                                   LL   MGI+ S+VGEKTL +CM+CFEESGA H RCL  E SQL IFRRWEIL EGTA 
Subjt:  GWVGRSGGPAFGKWCSSCMNLRTWGGVAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKTLNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAH

Query:  GVVFGANLVY
         VV GAN +Y
Subjt:  GVVFGANLVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGCAATGATAGCAGGATGGATCCAGATTTGGCATTGGAAAATGGTTCTGTTGTGACTGGAAGTGTGTCTCAAAATGGTCAATCTAAGGAGTTGGAGACTGAATC
TGAACCTCAAGGCATGACATGTGGAGGGGAAGTACTGGATGCTGGATGGGTTGGGAGGTCGGGAGGACCAGCATTTGGTAAATGGTGTTCATCATGTATGAACCTGCGGA
CTTGGGGAGGAGTCGCGTGGCATGGTGGCGTGGCATACGGTTCAGCTCCAGTATGCTGTTTATTGTCCTTGAACATGGGAATCCGAAGGAGTGCTGTTGGGGAAAAAACC
TTAAATAAGTGCATGCGATGCTTTGAAGAATCTGGTGCATTTCATGTTAGATGCCTGGTGATGGAACTGTCACAGCTTTCCATTTTTAGAAGATGGGAGATTCTTAGTGA
AGGAACTGCTCATGGGGTCGTTTTCGGGGCGAATCTAGTCTACACTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGCAATGATAGCAGGATGGATCCAGATTTGGCATTGGAAAATGGTTCTGTTGTGACTGGAAGTGTGTCTCAAAATGGTCAATCTAAGGAGTTGGAGACTGAATC
TGAACCTCAAGGCATGACATGTGGAGGGGAAGTACTGGATGCTGGATGGGTTGGGAGGTCGGGAGGACCAGCATTTGGTAAATGGTGTTCATCATGTATGAACCTGCGGA
CTTGGGGAGGAGTCGCGTGGCATGGTGGCGTGGCATACGGTTCAGCTCCAGTATGCTGTTTATTGTCCTTGAACATGGGAATCCGAAGGAGTGCTGTTGGGGAAAAAACC
TTAAATAAGTGCATGCGATGCTTTGAAGAATCTGGTGCATTTCATGTTAGATGCCTGGTGATGGAACTGTCACAGCTTTCCATTTTTAGAAGATGGGAGATTCTTAGTGA
AGGAACTGCTCATGGGGTCGTTTTCGGGGCGAATCTAGTCTACACTTATTGA
Protein sequenceShow/hide protein sequence
MAGNDSRMDPDLALENGSVVTGSVSQNGQSKELETESEPQGMTCGGEVLDAGWVGRSGGPAFGKWCSSCMNLRTWGGVAWHGGVAYGSAPVCCLLSLNMGIRRSAVGEKT
LNKCMRCFEESGAFHVRCLVMELSQLSIFRRWEILSEGTAHGVVFGANLVYTY