; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G010800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G010800
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr08:19379800..19381995
RNA-Seq ExpressionLsi08G010800
SyntenyLsi08G010800
Gene Ontology termsGO:0016310 - phosphorylation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR039903 - E3 ubiquitin-protein ligase Zswim2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065044.1 hypothetical protein E6C27_scaffold82G003720 [Cucumis melo var. makuwa]7.3e-7086.75Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSS----ITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDC
        ALGLSLDD+CLRRRTLRPCQLNRLLAAPIMLKSLAE+GLRKVFHQQFFQV D ACSS    +T+ DMEDGT CPVCLDDMKK DRVVACSTCRNLVHEDC
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSS----ITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDC

Query:  FSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS
        F+RWKRSKGRRNVSCVVCRA+WKDTKD+QKYLNLSAYINEH+ ID NLYN+
Subjt:  FSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS

XP_004148392.1 mitogen-activated protein kinase kinase kinase 1 [Cucumis sativus]6.4e-6685.06Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIAC-----SSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHED
        ALGLSLDD+CLRRRTLRPCQLNRLLAAPIMLKSLAE+GLRKVFHQQFFQV D A      SS+T+ DMEDG+ CPVCLDDMKKKDRVVACSTCRNLVHED
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIAC-----SSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHED

Query:  CFSRWKRSKGRRNVSCVVCRAQWKDTKD-QQKYLNLSAY-INEHEAIDHNLYNS
        CF+RWKRSKGRRNVSCVVCRA+WKDTKD QQKYLNLSAY INEH+ ID  LYNS
Subjt:  CFSRWKRSKGRRNVSCVVCRAQWKDTKD-QQKYLNLSAY-INEHEAIDHNLYNS

XP_016899980.1 PREDICTED: uncharacterized protein LOC103488177 [Cucumis melo]7.3e-7086.75Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSS----ITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDC
        ALGLSLDD+CLRRRTLRPCQLNRLLAAPIMLKSLAE+GLRKVFHQQFFQV D ACSS    +T+ DMEDGT CPVCLDDMKK DRVVACSTCRNLVHEDC
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSS----ITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDC

Query:  FSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS
        F+RWKRSKGRRNVSCVVCRA+WKDTKD+QKYLNLSAYINEH+ ID NLYN+
Subjt:  FSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS

XP_023546870.1 uncharacterized protein LOC111805851 [Cucurbita pepo subsp. pepo]8.1e-6178.47Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSRW
        ALG+SLDD+CLRRRTLRPCQLNRLLAAPI+L+SLAE+G+R++FHQQFFQVK+   S+  +   E+GT CPVCLDDMKK DRVVACSTCRNLVHEDCFSRW
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSRW

Query:  KRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNL
        KRSKGRR VSCVVCRA+WK+T DQQKYLNLSAY+NEH+ +D+NL
Subjt:  KRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNL

XP_038885291.1 uncharacterized protein LOC120075728 [Benincasa hispida]1.1e-6890.41Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSRW
        ALGLSLDD CLRRRTLRPCQLNRLLAAPIMLKSLAEVGLR VFHQQFFQVK+ A  S+T+VDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSRW
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSRW

Query:  KRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYN
        KRSKGRR+VSCVVCRA+WKD KDQQKYLNLSAYINEH+AID NLY+
Subjt:  KRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYN

TrEMBL top hitse value%identityAlignment
A0A0A0LS10 SWIM-type domain-containing protein3.1e-6685.06Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIAC-----SSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHED
        ALGLSLDD+CLRRRTLRPCQLNRLLAAPIMLKSLAE+GLRKVFHQQFFQV D A      SS+T+ DMEDG+ CPVCLDDMKKKDRVVACSTCRNLVHED
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIAC-----SSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHED

Query:  CFSRWKRSKGRRNVSCVVCRAQWKDTKD-QQKYLNLSAY-INEHEAIDHNLYNS
        CF+RWKRSKGRRNVSCVVCRA+WKDTKD QQKYLNLSAY INEH+ ID  LYNS
Subjt:  CFSRWKRSKGRRNVSCVVCRAQWKDTKD-QQKYLNLSAY-INEHEAIDHNLYNS

A0A1S4DW96 uncharacterized protein LOC1034881773.5e-7086.75Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSS----ITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDC
        ALGLSLDD+CLRRRTLRPCQLNRLLAAPIMLKSLAE+GLRKVFHQQFFQV D ACSS    +T+ DMEDGT CPVCLDDMKK DRVVACSTCRNLVHEDC
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSS----ITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDC

Query:  FSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS
        F+RWKRSKGRRNVSCVVCRA+WKDTKD+QKYLNLSAYINEH+ ID NLYN+
Subjt:  FSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS

A0A5A7VCN6 SWIM-type domain-containing protein3.5e-7086.75Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSS----ITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDC
        ALGLSLDD+CLRRRTLRPCQLNRLLAAPIMLKSLAE+GLRKVFHQQFFQV D ACSS    +T+ DMEDGT CPVCLDDMKK DRVVACSTCRNLVHEDC
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSS----ITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDC

Query:  FSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS
        F+RWKRSKGRRNVSCVVCRA+WKDTKD+QKYLNLSAYINEH+ ID NLYN+
Subjt:  FSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS

A0A6J1BPZ4 uncharacterized protein LOC1110047039.4e-5573.83Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKK--KDRVVACSTCRNLVHEDCFS
        ALG+SLDD CLRRRTLRPC LNRLL APIML+S+A +G+R+VFHQ+FFQVK  A  S ++VD+EDGTTCPVCLD+MKK   DRVVAC TCRN+VHEDCF 
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKK--KDRVVACSTCRNLVHEDCFS

Query:  RWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS
        RWKRSKGRR+VSCVVCRA+W+DT  Q+KYLNLSAYINE   I+++LYN+
Subjt:  RWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS

A0A6J1GJ16 mitogen-activated protein kinase kinase kinase 12.4e-5875.34Show/hide
Query:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSRW
        ALG+SLDD CL RRTLRPCQLNRLL AP+M +SLAE+ LR+VFHQQFFQVK+  C  + IVD+EDG  CPVCLDD+ K DRVVAC+TCRNLVH+DCFSRW
Subjt:  ALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSRW

Query:  KRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYN
        KRSKGRRN+SCVVCRA+WKDT ++QKYLNLSAY++EH+A+D+N YN
Subjt:  KRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11620.1 SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related7.4e-2035.47Show/hide
Query:  LGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQF----FQVKDIACSSITIVDM-----EDGTTCPVCLDDM--------------KK
        LG+ LDD CLR+R LR C L  L +AP     LA   L++ F Q F     Q      SS +   M     E+  TCP+CLDD+              +K
Subjt:  LGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQF----FQVKDIACSSITIVDM-----EDGTTCPVCLDDM--------------KK

Query:  KDRVVACSTCRNLVHEDCFSRWKRSKGRRNVSCVVCRAQWKDTKDQQK--------------YLNLSAYINE
        +  VV C  C+N VH++C   W++S+GRR   CVVCRA+W   +  +               YLNL+ Y++E
Subjt:  KDRVVACSTCRNLVHEDCFSRWKRSKGRRNVSCVVCRAQWKDTKDQQK--------------YLNLSAYINE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTCTTCGAGCAACTCTACCTTGCTGTTGCATTCCTCTTAGAGCTCGTACAACGGTGTAGTGTGGCTCTGGGTTTGTCACTTGATGACATATGTCTTCGGCGAAG
AACACTTCGACCTTGCCAATTGAATCGTTTGCTTGCTGCGCCCATAATGTTAAAATCACTTGCAGAAGTTGGCTTACGTAAAGTATTTCATCAACAATTCTTTCAGGTAA
AAGATATAGCTTGTTCTTCTATAACCATTGTAGATATGGAAGATGGAACTACATGTCCAGTTTGTTTGGATGATATGAAGAAGAAGGATCGGGTCGTTGCTTGTTCAACG
TGTCGGAATCTTGTTCATGAAGATTGTTTCTCGAGGTGGAAACGGAGCAAGGGAAGGAGAAATGTTAGTTGCGTAGTTTGTAGAGCACAGTGGAAAGATACGAAAGACCA
ACAAAAGTATTTGAATTTGTCTGCCTATATCAACGAACACGAAGCAATTGACCACAATCTCTATAATAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTCTTCGAGCAACTCTACCTTGCTGTTGCATTCCTCTTAGAGCTCGTACAACGGTGTAGTGTGGCTCTGGGTTTGTCACTTGATGACATATGTCTTCGGCGAAG
AACACTTCGACCTTGCCAATTGAATCGTTTGCTTGCTGCGCCCATAATGTTAAAATCACTTGCAGAAGTTGGCTTACGTAAAGTATTTCATCAACAATTCTTTCAGGTAA
AAGATATAGCTTGTTCTTCTATAACCATTGTAGATATGGAAGATGGAACTACATGTCCAGTTTGTTTGGATGATATGAAGAAGAAGGATCGGGTCGTTGCTTGTTCAACG
TGTCGGAATCTTGTTCATGAAGATTGTTTCTCGAGGTGGAAACGGAGCAAGGGAAGGAGAAATGTTAGTTGCGTAGTTTGTAGAGCACAGTGGAAAGATACGAAAGACCA
ACAAAAGTATTTGAATTTGTCTGCCTATATCAACGAACACGAAGCAATTGACCACAATCTCTATAATAGTTAA
Protein sequenceShow/hide protein sequence
MQFFEQLYLAVAFLLELVQRCSVALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRKVFHQQFFQVKDIACSSITIVDMEDGTTCPVCLDDMKKKDRVVACST
CRNLVHEDCFSRWKRSKGRRNVSCVVCRAQWKDTKDQQKYLNLSAYINEHEAIDHNLYNS