CuGenDBv2

Gene ID	Lsi08G011220
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Aminoacyl-tRNA hydrolase
Genome location	chr08:19868175..19873993
RNA-Seq Expression	Lsi08G011220
Synteny	Lsi08G011220
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652176.1 hypothetical protein Csa_022195 [Cucumis sativus]

1.3e-10

58.21

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTSD C+PHNIDSMHKV      L V  +  +  +   + KANSIVHK WIEQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

KAG7020347.1 putative peptidyl-tRNA hydrolase PTRHD1, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.4e-10

56.72

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTS+ CSP NIDSMHKV      L V  +  I  +   + KANSIVHK W+EQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

XP_011649759.1 putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucumis sativus]

1.3e-10

58.21

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTSD C+PHNIDSMHKV      L V  +  +  +   + KANSIVHK WIEQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

XP_031736857.1 putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 [Cucumis sativus]

1.3e-10

58.21

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTSD C+PHNIDSMHKV      L V  +  +  +   + KANSIVHK WIEQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

XP_038884124.1 putative peptidyl-tRNA hydrolase PTRHD1 [Benincasa hispida]

2.6e-11

61.19

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTSD CSPHNIDSMHKV      L V  +  I  +   + KANSIVHK WIEQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLQ2 Aminoacyl-tRNA hydrolase

6.3e-11

58.21

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTSD C+PHNIDSMHKV      L V  +  +  +   + KANSIVHK WIEQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

A0A6J1GHT5 Aminoacyl-tRNA hydrolase

4.1e-10

56.72

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTS+ CSP NIDSMHKV      L V  +  I  +   + KANSIVHK W+EQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

A0A6J1GJ11 Aminoacyl-tRNA hydrolase

4.1e-10

56.72

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTS+ CSP NIDSMHKV      L V  +  I  +   + KANSIVHK W+EQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

A0A6J1KJQ6 Aminoacyl-tRNA hydrolase

4.1e-10

56.72

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTS+ CSP NIDSMHKV      L V  +  I  +   + KANSIVHK W+EQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

A0A6J1KTS0 Aminoacyl-tRNA hydrolase

4.1e-10

56.72

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        S IWLNKDD HTS+ CSP NIDSMHKV      L V  +  I  +   + KANSIVHK W+EQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G10700.1 Peptidyl-tRNA hydrolase II (PTH2) family protein

1.7e-05

38.81

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Query:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL
        + IW  KDD  T   C P +IDSMHKV      L V  +  +  +   + K   I HK W+EQP+N+
Subjt:  SVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNL

Sequences

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CDS sequence

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mRNA sequence

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ATGATAATTCCGTTCCTCCACCGGACAACGGCGGAGCGAAGTCGGAGGAGACAGCCGATTATGTGGTGCTCCGTCATTTGGTTGAATAAAGACGATCTCCACACTTCCGA
CTGCTGTAGTCCACACAACATCGATTCCATGCACAAGGTGCTCTACATTTCACTGATTCTTAGAGTTGTTCTGGATTTTTTGATCCCTGAAGTCGGTTACTTTAGAAGTA
AAGCAAATTCAATCGTGCATAAATTTTGGATAGAACAACCAGATAATCTGTCGTATCACCATTTTTTGAAAAGCTGAAACTCTGAACTGGTCAACCACCATACGACGGCG
GTCAAACCGACCATCGGGCGGCGTTTTCGGCGGTGCGCAGGCGAAGTGAAGAGGAAAAAGAAAAGAAGAGAAAATAAAAGAAGGAAATGAAGATTAAAAAAGAAAAAAGT
TTCAAAAAAATATTAAAAAGAAGAAGAAAAAAAGAAAGAGATACAAACCTCAGTCTGGAGCCTGAAAATAAAGTGTGAGAACTCTGTTGAAAGGTTAACACCTTTTATAT
TGAGAATGCTAATCCTTTTT

Protein sequence

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MIIPFLHRTTAERSRRRQPIMWCSVIWLNKDDLHTSDCCSPHNIDSMHKVLYISLILRVVLDFLIPEVGYFRSKANSIVHKFWIEQPDNLSYHHFLKS

Lsi08G011220 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome